Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0718 ATGGCCGCCAATAATCATCCCAATCCCAATCCCAATCCCAATCCCTTCAACGCCAAAGGCTATGAACTCACCACCAACGTCCTCCTCACCATCACCGTCGTCCTGTTCTTCCTCATCATTCTATTGATTTCCCTTCACTTCTATGCCCGCTGGTACCTCCGCCGTGCTCGCCTTCGTCACCGCCAGCGCCGCCGTTCATATCTCGTCTTCTACGTCGACTCCTTCACCTCCGACTCCCTCCCACCCGTCGGTCTCGACCCCTCTGTCATTCAGTCTCTCCCTGTCTTCGTTTACTCTGCCAACTCCGATCCCGTGGAATGCGCTGTGTGCTTGTCCCATTTCCAAGATAACGAATCGGGTCGGGTTTTGCCCAAATGCAACCACACTTTTCACGTCGAATGCATCGACATGTGGTTCCAGTCCCACTCAACTTGTCCGCTCTGTAGATCTTTGGTTGAACTCGTCCAGCCCGGGGGCCAACCCGGTCCGGAAGTGGTGCTCGATATGTGCGAACCGGTTTCGAGTTCAGGGTGTCATCAGGATGGAGAAGAAGAGAACCGAAGCGGGCGGACGCTCTGTTCTTCGTCGTCTTCGATTGGGCTAAGGCGAAAGCCGTCGTCCGTGGGTGTGGCAATTGACGTGCCATTTAGCAGAAGCTTGGGGAGAGAGGCGGAGGGGTCGACGACGTCGTGTAGATCCCCGGGGGGTCGTATGCTATCTTTCAAGAGAATACTGAGCAGAGAGAGAAAACCAAGTACTTCGTCTTCATCTTCGGAAAATTGTGGCGTTGGTTGCAGCTCCGTGACCGAGATATAG 816 0.5466 MAANNHPNPNPNPNPFNAKGYELTTNVLLTITVVLFFLIILLISLHFYARWYLRRARLRHRQRRRSYLVFYVDSFTSDSLPPVGLDPSVIQSLPVFVYSANSDPVECAVCLSHFQDNESGRVLPKCNHTFHVECIDMWFQSHSTCPLCRSLVELVQPGGQPGPEVVLDMCEPVSSSGCHQDGEEENRSGRTLCSSSSSIGLRRKPSSVGVAIDVPFSRSLGREAEGSTTSCRSPGGRMLSFKRILSRERKPSTSSSSSENCGVGCSSVTEI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0718 271 MobiDBLite consensus disorder prediction 177 202 - -
Lele21g0718 271 MobiDBLite consensus disorder prediction 242 271 - -
Lele21g0718 271 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lele21g0718 271 SUPERFAMILY RING/U-box 106 155 - -
Lele21g0718 271 FunFam RING-H2 finger protein ATL3 77 154 - -
Lele21g0718 271 Pfam Ring finger domain 106 149 IPR001841 -
Lele21g0718 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 153 IPR013083 -
Lele21g0718 271 MobiDBLite consensus disorder prediction 250 271 - -
Lele21g0718 271 SMART ring_2 107 148 IPR001841 -
Lele21g0718 271 CDD RING-H2_EL5_like 106 149 - -
Lele21g0718 271 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 154 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0718 Lele-ChrLele21 4694288 4695103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0718 4 254 Rapid Response to Elicitors AT3G16720 44.086 1.04e-56 182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0718 21 4694288 4695103 Lele21g0718 21 4694288 4695103 ECH
Lele21g0718 21 4694288 4695103 Lele23g1327 23 18407677 18408480 hybridization
Lele21g0718 21 4694288 4695103 Lele24g0699 24 4636475 4641900 hybridization