Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0716 ATGATAGCGGTCGCGTCGTCCGAGGAGGATCACGGTCATTTTTCGGTGTCTCAAAAGAACGTGGACATGCTTTGCAGTTCAACCCAATACAAAGAAACCTGCCAGCGCAGCCTCGCGAAAGCATCCAACCGCACCACCGACGTTAAAGAACAGATCAAAGCCACCTTCCACGCCGCCGCCAAGGAGTTCAAGAAGTTCATCGACAACTCCACCCTCTTCCAAGAGCTTGCCAAGGACAACATGACCAAGCAGGCCATGGAAATCTGCCACGAGGTGCTCGACTACGCCATTGACGACGTTAGGAACTCCATCGATAGCGTCGACCAGTTCGATATAAGCAAGCTCGGTGAATACGCTTATGATGTTAAGGTGTGGCTCGGAGGCACCATCTCCCACCAACGCACCTGCTTGGACGGCTTCGAGAACACCACCACTCACGCCGCCGAGACAATGGCCAGGGTGTTGAACACCTCCCTCGTGCTCAGCAAGAACGCTTTGGACATTATCTCTGGCCTCTCCGACGTCGCCCAAGCCTTTGGATTCGTCGGTTTCGGCTTCGGCGGCGGCCAGCAGCAAGCTCCTGCCGATAACAACACCTCCGGCTCCAGTCGGAAGATCCTCGAGAGCTCCCCGTCCTGGGTAAGTGGTAGCCAACATCGTCACCTCCTCGCCGCGGCCGCAGCTGGTGCCGCCAATGTTAAGCCCGATGCTGTTGTGGCTCAAGACGGAAGTGGGCAGTTCAAAACACTCGGCGACGCTCTTAAAACTGTTCCGCGGAAAAATACTAAACCCTTTGTGATTTACGTTAAGGCCGGCTTGTATAAGGAGATTGTGAACATTCCCAAGACATCCAGTTATATCACCATCGTTGGAGATGGTCCCACCGCCACCAGATTCACCGGCAGTCTCAACTTTATCGACGGCGTCCAAACTTACAACACCGCAACATTCGCTGTGAATGCTCCTTTCTTCACGGCCATGCACGTGGGGTTCGAGAACACTGCCGGAGCAAGTAAGCACCAAGCCGTGGCGCTCCGAGTAACAGCAGATAAAGCCATCTTCTACAACTGCCACATGGACGGGTACCAAGACACCCTCTACGCCCAGTCCCACCGCCAGTTCTACCGCGACTGCCAAATCTCCGGCACAATCGACTTCATCTTCGGCGACGCCGATATGGTCTTCCAGAACTGCACTTTGATCGTCAGGCCACCATTAAGCGCCCAGAGCTGCATCGTCTCAGCCAGTGGCCGCGACGTGAGCAACAGCCCCAGCGCCATGGTGTTCCAGAGCTGCCGCTTCGTGGCCGACCCTCTCTACCTCTCCGACCCAGCGAAGAAGCCGGCATACCTTGGACGACCATGGAGGGCATACGCCAAGGTGATTATCATGGATTCTTTTATCGACGGCTTCTTCGCTCCCGAAGGTTACATGTCGTGGATGGGTAGCATCTATCACATGACCTCCATCTTCGACGAGTACAACAACAAAGGTCCCGGCTCCGATACCTCTCACAGAGTGAAATGGCCCGGCGTGAAGACGATCACTTCTGCTGAAGCTGCAAATTACTATCCTCACAATTTCTATGAATTCCGCAATGCAACTAACGCTGAAGATGATTCCTGGATCTCTGCCTCGGGGATTCCCTACGCCGTTGGCCCCATGGCCGTACCAGCAAATTGA 1683 0.5478 MIAVASSEEDHGHFSVSQKNVDMLCSSTQYKETCQRSLAKASNRTTDVKEQIKATFHAAAKEFKKFIDNSTLFQELAKDNMTKQAMEICHEVLDYAIDDVRNSIDSVDQFDISKLGEYAYDVKVWLGGTISHQRTCLDGFENTTTHAAETMARVLNTSLVLSKNALDIISGLSDVAQAFGFVGFGFGGGQQQAPADNNTSGSSRKILESSPSWVSGSQHRHLLAAAAAGAANVKPDAVVAQDGSGQFKTLGDALKTVPRKNTKPFVIYVKAGLYKEIVNIPKTSSYITIVGDGPTATRFTGSLNFIDGVQTYNTATFAVNAPFFTAMHVGFENTAGASKHQAVALRVTADKAIFYNCHMDGYQDTLYAQSHRQFYRDCQISGTIDFIFGDADMVFQNCTLIVRPPLSAQSCIVSASGRDVSNSPSAMVFQSCRFVADPLYLSDPAKKPAYLGRPWRAYAKVIIMDSFIDGFFAPEGYMSWMGSIYHMTSIFDEYNNKGPGSDTSHRVKWPGVKTITSAEAANYYPHNFYEFRNATNAEDDSWISASGIPYAVGPMAVPAN 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0716 560 TIGRFAM PME_inhib: pectinesterase inhibitor domain 16 172 IPR006501 GO:0004857
Lele21g0716 560 SMART PMEI_2 16 168 IPR006501 GO:0004857
Lele21g0716 560 Pfam Plant invertase/pectin methylesterase inhibitor 21 167 IPR006501 GO:0004857
Lele21g0716 560 CDD PMEI-like_3 24 173 - -
Lele21g0716 560 Pfam Pectinesterase 236 528 IPR000070 GO:0030599|GO:0042545
Lele21g0716 560 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Lele21g0716 560 PANTHER PECTINESTERASE 20 544 - -
Lele21g0716 560 Gene3D - 233 555 IPR012334 -
Lele21g0716 560 FunFam Pectinesterase 17 173 - -
Lele21g0716 560 FunFam Pectinesterase 4 233 554 - -
Lele21g0716 560 MobiDBLite consensus disorder prediction 191 212 - -
Lele21g0716 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 15 173 IPR035513 -
Lele21g0716 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 19 172 IPR035513 -
Lele21g0716 560 SUPERFAMILY Pectin lyase-like 233 550 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0716 Lele-ChrLele21 4686298 4688081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0716 17 556 Carbohydrate Esterase AT3G05610 44.630 2.07e-168 491