Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0708 ATGAATTCGAATAATGGCAAATCCAACCAACAGAAAGGTTCTGCTGCCTCTCTGAACAACTTCAATTTCGACTTCGATCTTGGGATCGGATCGAATCGACCCAAATCTCTCAACGATCAGAAAAACCATACCTCGTCCAATTCATATTTTACTTCTTCCTCCACATATTCGTCTACTCAACCAAGACCCGCTTGGCAACCAGGCAAACCATCATGGACTCACCAGCCGTCGCCCAGTCTGGCGGCTCAACCCGGCTTGCCGGGTGGTCCCGTTTCAATGGTTGGGGATATCTCCGGCAAGAGCTGGGGATCGACTCAACCTTCGGCTTCGAATTCTAGTATCGGAATTGTTAATAAAGATCCTAATCTCTTTGGGGATTTGCTTGGCTCTGCTTTAGGGCAGAGTTCTAAGAGTAGCGGCAATGTTCCCCTGAAAAATGCTACACCTATTTCAAAGGCATCCAGTACTGTATCCAACAAGAGTCCGTTTTCCCTGGGGAATATGGCGGATTCTTTGCCTAAAACTAGTAGTACAGTTCAAAGCAATGGAAGTTGGGGATCTTCTGGGAATACGGGGAGCTATTCCAGCGGCTACAATAGTAATAGCACTATGAGCTCCAATAAAGGCACCACTCTTGGGGGTCCTTCATTGCGCAGTATGAATGTTGGAAGTGGTGCAGCTGGTAGTGGAATGAGTTCTAATAAAGATCCATTTGGTTCTTTGGCTGGTTTTGGATCCAAAAAGTCTGGTAATCTTAATTCAGCTAGCAAAGCAAAAGAGAATGATGCCGGGGATGATGGTTTTGGACATTTTCAGAGTGCTTCCAAACCGAGCTCTACTACATTCCCATCAAGTAGTTCAACAGAAAATAGTTTCAATCTTAATGGATCTGCGTCTTTGAGCCAGAAACCTGTACAAACTTCTGGTAGTGATCCATTGGACATGTTCTTCTCAAGTTCCTCGGCGGCATCTGGAAGTGCTGCTGTAGCCTCTGAAGGATTTGGAGGAAAGCCTTCTTCAGAAGTTGATGATTGGGGCTTAGATTCTGAATTTGGTGGGGGAGGCCATGATGTGGGCGGAACAACCACTGAGCTTGAAGGACTTCCCCCTCCTCCTGCTGGTATATCTGGTTCTGCAGCAAAAAGTAAGGGGTTGGACAATTACAAGCAGGGACAATTTGCTGATGCTATAAAGTGGCTTTCCTGGGCTATCATCCTTCTTGAGAAATCAGGTGATGATGCAGGCACTACGGAAGTTTTGTCATGCAGGGCTTCGTGTTACAAGGAAGTTGGGGAGTACAAGAAAGCAGTAGCAGATTGTACAAAGGTGCTTGAGAACGATGAAACAAACGTATCCGTTCTTGTACAACGTGCTCTTTTGTATGAGAGTATGGAAAAGTACAAACTTGGTGCTGAAGACCTGAGAACTGTTCTGAAGATTGATCCTATTAATAGGGTTGCAAGAAGTACCGTTCACCGATTGAATAGGATGGCTGATTAG 1500 0.4547 MNSNNGKSNQQKGSAASLNNFNFDFDLGIGSNRPKSLNDQKNHTSSNSYFTSSSTYSSTQPRPAWQPGKPSWTHQPSPSLAAQPGLPGGPVSMVGDISGKSWGSTQPSASNSSIGIVNKDPNLFGDLLGSALGQSSKSSGNVPLKNATPISKASSTVSNKSPFSLGNMADSLPKTSSTVQSNGSWGSSGNTGSYSSGYNSNSTMSSNKGTTLGGPSLRSMNVGSGAAGSGMSSNKDPFGSLAGFGSKKSGNLNSASKAKENDAGDDGFGHFQSASKPSSTTFPSSSSTENSFNLNGSASLSQKPVQTSGSDPLDMFFSSSSAASGSAAVASEGFGGKPSSEVDDWGLDSEFGGGGHDVGGTTTELEGLPPPPAGISGSAAKSKGLDNYKQGQFADAIKWLSWAIILLEKSGDDAGTTEVLSCRASCYKEVGEYKKAVADCTKVLENDETNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPINRVARSTVHRLNRMAD 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0708 499 MobiDBLite consensus disorder prediction 272 312 - -
Lele21g0708 499 MobiDBLite consensus disorder prediction 98 114 - -
Lele21g0708 499 MobiDBLite consensus disorder prediction 135 234 - -
Lele21g0708 499 MobiDBLite consensus disorder prediction 23 114 - -
Lele21g0708 499 SMART tpr_5 377 410 IPR019734 GO:0005515
Lele21g0708 499 SMART tpr_5 417 450 IPR019734 GO:0005515
Lele21g0708 499 SMART tpr_5 451 484 IPR019734 GO:0005515
Lele21g0708 499 SUPERFAMILY TPR-like 379 488 IPR011990 GO:0005515
Lele21g0708 499 MobiDBLite consensus disorder prediction 33 80 - -
Lele21g0708 499 MobiDBLite consensus disorder prediction 251 312 - -
Lele21g0708 499 MobiDBLite consensus disorder prediction 329 380 - -
Lele21g0708 499 Pfam Tetratricopeptide repeat 452 483 IPR019734 GO:0005515
Lele21g0708 499 Gene3D Tetratricopeptide repeat domain 377 498 IPR011990 GO:0005515
Lele21g0708 499 PANTHER OS03G0340700 PROTEIN 1 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0708 Lele-ChrLele21 4640269 4642228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0708 392 495 Calmodulin-binding Proteins AT3G25230 31.776 6.94e-09 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0708 21 4640269 4642228 Lele21g0708 21 4640269 4642228 ECH
Lele21g0708 21 4640269 4642228 Lele23g1336 23 18458717 18460676 hybridization
Lele21g0708 21 4640269 4642228 Lele24g0689 24 4574563 4576519 hybridization