Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0682 ATGTCAACAGCCAGTTCTAGTACCGTTCGGAAATCCGGCGACGGCGCCGCTGCCGTCGACCAGTTCCCGGCGGGCTTGCGGGTACTGGTGGTCGACGATGATCCCACTTGCCTTATGATCCTTGAGAAGATGCTTCGTACTTGCCTCTACGAAGTAACAAAATGCAATCGAGCTGAAGTTGCATTGTCTCTTCTGAGAGAGAACAAAAACGGGTTCGACATAGTTATAAGCGATGTGCATATGCCAGACATGGATGGCTTCAAGCTTTTAGAACACATAGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCAGATGATGGGAAAAATGTTGTTATGAAAGGTGTTACACATGGTGCTTGTGATTACCTAATAAAACCTGTGCGTATCGAGGCCTTGAAGAACATATGGCAGCATGTGGTTAGGAAAAGAAAGAACGAGTGGAAGGATTTGGAGCAATCATATAGCACAGAAGAAGGAGATCGGCAGCAAAAGGCATCGGATGAAGCAGATTACTCGTCGTCAGCGAATGAAGGAAATTGGAGATGTGCTAAGAAGAAGAGAGATGAGGAGGAAGAAGCAGAGGAGAAGGATGATACTTCTACATTAAAGAAGCCACGCGTCGTTTGGTCCGTCGAGCTCCACCAACAGTTTGTGGCTGCTGTGAATCAACTGGGAATTGACAAGGCTGTTCCCAAGAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCTAGCCATCTTCAGAAATACCGTTTGTATCTAAGAAGACTCAGTGGCATTTCTCAGCACCAGAGTAACATGAACAACTCTTTCATCAGTCAACAAGAAGCAACCTTTGGAACAATGTCAGCATTTAATGGAATCGATCTTCAAGCTCTTGCAGCAGCCGGCCAGCTTCCGGCACAAAGTCTGGCAGCCCTTCAAGCAGCAGGACTCGGTAGATCAACTGCTAAAGTTGGAGTATCTGTGCCCCTTGTCGATGAAAGGAACCTCTTCAGTTTTGAAAACCCTAGATTAAGATTTGGAGATGGGCAACAGCAGCACTTGAGCAGTACTAAATCAACAAACTTACTTCATGGAATCCCTACCAACATGGAGCCAAGGCAGCTTGCCAATTTGCAACAATCAACACAATCCCTCGGTGGGATGAACGTGCGAGTCAACACATCCGCGGCACAGAGCAACTCCTTATTGATGCCAATGACTCAATCTCAACCGAGAGGTCAGATGCTCAACGAAAACACTGCTTCGCATGTTCCGAGACCTCCATTATCCATTGGGCAGCCTACTGCACCAACTGGAATTTCTAACACTGCTTCTCTGGGAAGAAATGGGATTGCTGGTAATCACAGAGGAGCTTCTTATGATCTTATTCCACAAACTTCTTCAATGCCAAGTTTTCCAGCGAACCAAACTACGGAAATGTGTGTCAGTAGTTTCCCACTTGGAAGCACACCAGGCATATCTAGTATCCCGCCGAAAGGCGCATTTCAAGAGGAAGATACTACAGGAATTAAAGGATCTGGGGGATTTGTGCCAAGTTATGATATTTTTGACGAACTGAACCAGCAAAAGTCCCATGATTGGGGACAAAACGTTGGCCTCACATACGATACCTCTCAGCGTGCAAATCCTTTACACGGTAAAATCGATGTATTGCCATCAGTTATAGTACATCAGAGCTTTTCTTCCTCCATCCAACAACAACAGACAGGTCAGAATAGAGATTCTACTCTGATCGGAAAATCCATGTACTCCCAAGGAAAAGGTTTGGAAGAAGGCAACCTCCAAAATATTGATCAAAACCTCCATACTCTTGTTGAAAATCCTGCAAGGGTCAAGACTGAAATAATTTCTGATGCATACTCTCATTCGAACTTCTTCCCCGAGCATTGTGAGCAGGATGATCTCATGAGTGCGCTTCTGAAACAGCAAGAAGGCATTGGAGCAGCTGAGAATGAATTTGACTTTGATGGATATTCCTTGGACAACATTCCTGTCTAG 2025 0.4523 MSTASSSTVRKSGDGAAAVDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSYSTEEGDRQQKASDEADYSSSANEGNWRCAKKKRDEEEEAEEKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGISQHQSNMNNSFISQQEATFGTMSAFNGIDLQALAAAGQLPAQSLAALQAAGLGRSTAKVGVSVPLVDERNLFSFENPRLRFGDGQQQHLSSTKSTNLLHGIPTNMEPRQLANLQQSTQSLGGMNVRVNTSAAQSNSLLMPMTQSQPRGQMLNENTASHVPRPPLSIGQPTAPTGISNTASLGRNGIAGNHRGASYDLIPQTSSMPSFPANQTTEMCVSSFPLGSTPGISSIPPKGAFQEEDTTGIKGSGGFVPSYDIFDELNQQKSHDWGQNVGLTYDTSQRANPLHGKIDVLPSVIVHQSFSSSIQQQQTGQNRDSTLIGKSMYSQGKGLEEGNLQNIDQNLHTLVENPARVKTEIISDAYSHSNFFPEHCEQDDLMSALLKQQEGIGAAENEFDFDGYSLDNIPV 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0682 674 MobiDBLite consensus disorder prediction 154 203 - -
Lele21g0682 674 SUPERFAMILY CheY-like 25 150 IPR011006 -
Lele21g0682 674 ProSiteProfiles Response regulatory domain profile. 27 142 IPR001789 GO:0000160
Lele21g0682 674 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 262 IPR017930 -
Lele21g0682 674 FunFam Two-component response regulator 26 163 - -
Lele21g0682 674 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Lele21g0682 674 MobiDBLite consensus disorder prediction 154 169 - -
Lele21g0682 674 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Lele21g0682 674 FunFam Two-component response regulator 202 265 - -
Lele21g0682 674 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 271 IPR045279 GO:0009736
Lele21g0682 674 Pfam Response regulator receiver domain 28 136 IPR001789 GO:0000160
Lele21g0682 674 CDD REC_typeB_ARR-like 28 142 - -
Lele21g0682 674 MobiDBLite consensus disorder prediction 182 203 - -
Lele21g0682 674 PIRSF RR_ARR_type-B 3 663 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele21g0682 674 Gene3D - 203 265 - -
Lele21g0682 674 Gene3D - 26 164 - -
Lele21g0682 674 SMART REC_2 26 138 IPR001789 GO:0000160
Lele21g0682 674 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0682 Lele-ChrLele21 4491033 4494005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0682 60 674 Response Regulator Gene Family AT3G16857 49.694 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele21g0682 Response_reg 9.8e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0682 21 4491033 4494005 Lele21g0682 21 4491033 4494005 ECH
Lele21g0682 21 4491033 4494005 Lele23g1357 23 18588683 18591643 hybridization
Lele21g0682 21 4491033 4494005 Lele24g0667 24 4438683 4441625 hybridization