Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0629 ATGGGAACTCCACCACCAGAAGAGCTTCTCAAGAAGATCGAGGACCTCGAGGTGGGTCACGCACACCTCAAGCAAGAAATGTCCAAGCTCAAGCTCTCGGGCGCCAGCGATGCTCGGGCCGAGCAGAGCCATCATCGCCAGAGGTCGCACTCGATATCACCGCAGCGTTCGAGATTGGGTACGTCCATGAGGAGAGCCGGTGGCGGCGGATTCGATGGACCGGCTTCGTGGAAGAAAGGTTCGACCTCGTTTAAACATTCATCACCGCTTCAGAGGGAAAGCCGTAGTAGTGATCCTCAAAATGATGGAGATGGTGGCGTTGGAAGAGGCCCTTCAGCTGTGAATTTTACTGATAAGCAGTATCTCAATATTTTGCAGTCAATGGGGCACTCTGTTCACATATTGGATCTTGATGGTCGTATAATATACTGGAACCGTAGTGCTGAACATCTATATGGTTATCCAGCGGAAGAAGCCCTTGGTAAGGATGGCATTGAGCTGATTGTAGACCCCAGGGATTTTGCCCTAGCCAATGATATAGTCAACCGGGTCTCTATGGGAGAGAAATGGATCGGGCAGTTCCCTGCCAAAAATAAGATGGGAGAGAAGTTTTTAGCTGTAGCTACTTATACGCCTTTATATGACGATGATGGAAGTTTGATTGGCATTATTTGTGTCTCAATTGATTCACGACCCGTCCTTGAAGTGAGAGTTCCGTTCTCAGGAGTAAAGCACTTTGAAACAGGTTCAGGCTTCAGCAATCTTAGAAGTAGCATTACAAATAAACTCGGTCTCGATTCTCAACAGCCTCTTCAAGTTGGTATAGCATCAAAAATTACAAATTTGGCATCCAAGGTAAGTAACAAAGTGAAGTCAAGAATCCGAACAGGAGAGAATAATGTGGATCGTGAAGGTGGGAGTGGTGAAAGTCATCATTCTGAGCATGGCTGTTCAGATTCGGTTCTTTCAGACCAGAGAGAAGATGCTAATTCAAGTGGAGCTAGCACACCCAGGGGAGAGGTTCCCCCATCTCCCTTTGGTGTATTTTCTCACACAGAAGATAAAAGTCAAGGAAAAAATTTAAGAGAGTCTGGTGATGACGGTGAAGGAAAACCTATTCATAAAGTCTTAACTTCCAAGGCTGAAGCATGGATTCAAAAGAAAACAATGTCATGGCCATGGAAAACAAATGAACGGGATGAGTCAGAGGGAAGGAATGTCCGTGTTGGTTGGCCTTGGTTGCAGAATGATCAGGAAAATGAGCCAGCTCAGAAGAAGCCTCTTTCTTCTTGTGTGAGGCCAGAAAGTCAGACAGGAGAAGGTAATCGACCTGTTAATAATGAAGCATTAGGATCCTGGTCCTCCTTCAATGTTAACAGCACAAGCAGTGCAAGCAGCTGTGGGAGTGGCAGCAGTGCTGTCAATAATAAATTGGACATGGATACTGATTGTTTGGATTATGAAATCTTGTGGGAAGACCTGACAATTGGAGAACAAATTGGGCAAGGATCATGTGGAACTGTGTATCATGCTCTGTGGTATGGATCAGATGTTGCGGTCAAGGTGTTCTCCAGGCAGGAATATTCAGATGATGTGATAATGTCCTTCAGACAAGAGGTATCTGTTATGAAAAGACTTAGACATCCAAATGTCCTTCTGTTCATGGGGGCAGTAACTTCACCTCAACGTCTCTGCATTGTGACAGAGTTCCTCCCACGTGGAAGCTTGTTTCGCTTACTCCAGAGAAACACAGCCAAACTTGACTGGAGAAGGCGTGTTCATATGGCTTTAGATATTGCACGGGGCGTAAACTATCTTCACCATTGCAGCCCACCTATCATTCATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGACAAGAACTGGACTGTTAAGGTCGGTGATTTTGGCCTTTCACGCCTAAAACATGAAACATACCTCACAACAAAGACAGGAAAGGGCACACCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAGCCCTCTGATGAGAAGTCTGATGTATACAGCTTTGGAGTGATTTTGTGGGAACTTACAACTGAGAAGATCCCTTGGGAGAGTCTTAACTCAATGCAGGTGATTGGAGCCGTTGGGTTCATGAACCAGCGGCTAGAAATTCCAAAGGATGTTGATCCCAAGTGGGCTGCTATAATTGAGAGCTGCTGGCATAGTGATCCTGCCTGCCGGCCAACATTTCAGGAACTGCTGGAAAGGCTTCGAGAGCTGCATAGACGTTATGCCCTTCAATTTCAAGCTTCTCGTACTGCCGGTGCTGAAAACACTCAAAATGAGTCCTAA 2319 0.4575 MGTPPPEELLKKIEDLEVGHAHLKQEMSKLKLSGASDARAEQSHHRQRSHSISPQRSRLGTSMRRAGGGGFDGPASWKKGSTSFKHSSPLQRESRSSDPQNDGDGGVGRGPSAVNFTDKQYLNILQSMGHSVHILDLDGRIIYWNRSAEHLYGYPAEEALGKDGIELIVDPRDFALANDIVNRVSMGEKWIGQFPAKNKMGEKFLAVATYTPLYDDDGSLIGIICVSIDSRPVLEVRVPFSGVKHFETGSGFSNLRSSITNKLGLDSQQPLQVGIASKITNLASKVSNKVKSRIRTGENNVDREGGSGESHHSEHGCSDSVLSDQREDANSSGASTPRGEVPPSPFGVFSHTEDKSQGKNLRESGDDGEGKPIHKVLTSKAEAWIQKKTMSWPWKTNERDESEGRNVRVGWPWLQNDQENEPAQKKPLSSCVRPESQTGEGNRPVNNEALGSWSSFNVNSTSSASSCGSGSSAVNNKLDMDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSRQEYSDDVIMSFRQEVSVMKRLRHPNVLLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTAKLDWRRRVHMALDIARGVNYLHHCSPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELTTEKIPWESLNSMQVIGAVGFMNQRLEIPKDVDPKWAAIIESCWHSDPACRPTFQELLERLRELHRRYALQFQASRTAGAENTQNES 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0629 772 SMART serkin_6 494 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g0629 772 SUPERFAMILY Protein kinase-like (PK-like) 482 746 IPR011009 -
Lele21g0629 772 MobiDBLite consensus disorder prediction 20 112 - -
Lele21g0629 772 TIGRFAM sensory_box: PAS domain S-box protein 119 229 IPR000014 -
Lele21g0629 772 ProSiteProfiles Protein kinase domain profile. 494 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g0629 772 PRINTS Tyrosine kinase catalytic domain signature 607 625 IPR001245 GO:0004672|GO:0006468
Lele21g0629 772 PRINTS Tyrosine kinase catalytic domain signature 568 581 IPR001245 GO:0004672|GO:0006468
Lele21g0629 772 PRINTS Tyrosine kinase catalytic domain signature 654 664 IPR001245 GO:0004672|GO:0006468
Lele21g0629 772 PRINTS Tyrosine kinase catalytic domain signature 673 695 IPR001245 GO:0004672|GO:0006468
Lele21g0629 772 PRINTS Tyrosine kinase catalytic domain signature 717 739 IPR001245 GO:0004672|GO:0006468
Lele21g0629 772 MobiDBLite consensus disorder prediction 323 338 - -
Lele21g0629 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Lele21g0629 772 CDD STKc_MAP3K-like 500 746 - -
Lele21g0629 772 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 114 752 - -
Lele21g0629 772 MobiDBLite consensus disorder prediction 291 322 - -
Lele21g0629 772 SMART pas_2 119 186 IPR000014 -
Lele21g0629 772 MobiDBLite consensus disorder prediction 355 373 - -
Lele21g0629 772 FunFam PAS domain-containing protein tyrosine kinase 487 571 - -
Lele21g0629 772 Gene3D PAS domain 130 232 - -
Lele21g0629 772 MobiDBLite consensus disorder prediction 417 450 - -
Lele21g0629 772 ProSiteProfiles PAS repeat profile. 117 188 IPR000014 -
Lele21g0629 772 Pfam Protein tyrosine and serine/threonine kinase 494 746 IPR001245 GO:0004672|GO:0006468
Lele21g0629 772 MobiDBLite consensus disorder prediction 80 96 - -
Lele21g0629 772 FunFam PAS domain-containing protein tyrosine kinase family protein 572 763 - -
Lele21g0629 772 Gene3D Phosphorylase Kinase; domain 1 487 571 - -
Lele21g0629 772 MobiDBLite consensus disorder prediction 290 373 - -
Lele21g0629 772 Pfam PAS fold 120 227 IPR013767 GO:0006355
Lele21g0629 772 SUPERFAMILY PYP-like sensor domain (PAS domain) 123 226 IPR035965 -
Lele21g0629 772 Gene3D Transferase(Phosphotransferase) domain 1 572 772 - -
Lele21g0629 772 CDD PAS 132 229 IPR000014 -
Lele21g0629 772 MobiDBLite consensus disorder prediction 415 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0629 Lele-ChrLele21 4189282 4196200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0629 1 768 MAP Kinase Kinase Kinase AT3G06620 61.529 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lele21g0629 PK_Tyr_Ser-Thr 1.1e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0629 21 4189282 4196200 Lele23g1412 23 18879820 18886680 hybridization
Lele21g0629 21 4189282 4196200 Lele24g0625 24 4165008 4171591 hybridization