Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0575 ATGAAAAGAATTGCTCCTCTTTCTGAGGATTTACTTCTGTTTATGGGATTATTTGAGGTTCATTCGTTGATTACTAAATACATATTATCCATGGCAACAGCTGAAGCACCTCCTGCTTCTCTTGTTCCCCGATATGCACCGGATGACCCCACTCTTCCAAAACCTTGGAAAGGATTGATTGATGGAAGTACGGGTCTATTATACTATTGGAACCCTGAAACCAACATCACCCAGTATGAAAAACCTACTGCTCCGCCATCACCCATGCCTGCTGAGCCACATCCTGCAGTTTCTACACCCAAGTTGGCTCCCATACCAGTGGCTCATTCAGTGCAACCTGGTGGGGTGGTGGCACAGCATGGGCAGCAGTTACTACAAACCTCTCCCCAACAGGGACACCAAATGAGCCACCTATCCCAACAGCATAGTCCCCAGGTAGCACAGGTCTCTCAGCAGCAGCCTTCTCAAGTAGCACAAGCTGGACAACAACAAAGTTCACAGTCACTTCAGTCTATGCCACAGCCAGGTTTGCAACAAGTCAGGCAGCAGCAGACGTTGCAGCCTATGAGTCAGCAAATTCCACCACAGCAAATGCATCATCAGATGCCACAACAAGCCATCCAGTCACAACCTTTTGGGCAAGGAGCCACCCAGGATCATGGTTCATATATGGGACAGCCACAAGCTCATCAATTCTGTCACCAGAACCTACATTACATGCCATATTCACAAAGCATGCACTCAAATGGGCAGCAAAATTCCCAGCCAATCCAGCATAACATGCATGGTCAGCCATTGGAAAATCAACAGGAGTTTAAAGCAGCATTCCCAAAGGTAGAGGACGTAGATTTTAAAAATGGAAGTCAAGTTGGACTTTCACCAGCCCAGTGTCAACAAAAGAGCGCCTTGCCTTTGCAAGGCAATCAGAACATTCCTGCTGGAATTTCCTCTGTCCAGTTGCCACGTGTTGGTGTTAATGCTGGCCAATCACAACCATTTGGTGGTATGCAACAGTCTTCAGCAATGCAATCGCAGCTGGGTAGTGCTGATTTAGTTTATCAACACGGTCATCGCTTTCAAAACCAGGTGGGCCCAGGAATGATGCATGGTCAGCCATCTAATGTCCATCCTGTTGACCGAAAGATGGGACATGAGGATAACTTGCGTGGTAGAGCTGTGAATGAATATTACTACAACTCTGGCAAGGAGATGCCACCAGTGGGTTCTCAGCAGCCAAATATTGCACCAATACCCATTTCAAGAAATCATCAGGCTTATCAGCAGGATATGAGGATTGGCGGTTCCCATTTTCAAAATGCAATGCCCGGTGGGAATGGGTTAAATGGTGTCCCAGGGCATAGTATGCATAACATGTTTAATCCTCCATTTGGAGGCCCTCCACCAGTTGCTAGTAACTCTTTGACTAGACCTCATGTCACTGATCTGTCACCTGCTGAAATTTACCGTCAGCAACATGAAGTTACAGCAACGGGCGACAATATTCCTGCCCCCTTCATGACATTCGATGCTGCTGGGTTTCCTCCAGAGATTTTGAGAGAGATCTATTCTGCGGGCTTCTCAACTCCAACACCTATTCAAGCTCAAACTTGGCCTGTTGCCCTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCGGGAAAAACATTGGGGTATTTAATGCCAGCATTTATGATTCTTAGACAGAGGCGTAACAACCCCCTGAATGGCCCAACAGTGTTGGTATTGGCTCCAACACGTGAACTTGCAACACAGATTCAAGATGAAGCCATAAAATTTGGCCGATCTTCACGGGTCTCCTGCACGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATACCACCACGTAGGCAAACTCTTATGTACACAGCAACATGGCCAAAAGAAGTACGAAAAATTGCTGGTGATCTCCTTGTTAATCCTGTCCAAGTTAATATCGGAAATGTTGACGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGGCGTTTAGAGCAGATCATCAGATCCCAAGAACAAGGTTCTAAGGTCATAATATTTTGCTCCACAAAGAGGTTGTGTGATCAACTTGCCCGTAGCATTGGCCGTAATTTTGGTGCAGCTGTAATCCATGGGGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTGAATCAGTTTAGGACTGGAAAGTCACCAGTTCTAGTTGCCACTGATGTTGCTGCCCGTGGGCTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCTACTGGAATTGAGGACTATGTACACCGTATTGGTCGAACAGGAAGGGCTGGAGCAACTGGAATGTCGTACACCTTTATCTCTGAGCAGGACTGGAAACATGCTGGTGACTTGATTAAAGTTTTGGAGGGTGCTAACCAGCTTGTGCCTCCGGAGTTACGACAGATGGCTTTGCGTGGGTCATCTAACTTTGGAAAGGATTATGGTGGAATGAGCCGTTTTGACTCTGGTGGTGGCCGTTGGGAGTCTAGCGGCCGTGGTGGCCGTGGTGGCACAAGAGACGGTGGCCGTGGTGGAATGAGCCATTTTGACTCTGGTGGTGGCCGTTGGGAGTCTAGCGGCCGTGGTGGCACAAGAGACGGTGGCTTTGGTGGTCGTGGTGGCATGAGGAATGGTGGTGGGTTTGGGGGTCGTGGTGGCATGAGGGATGGTCCGGGTGTGCAAGAGGGAAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTCGAGGAATGGGTGGTCCTCGAGGTGGTCATGTTGGCTGGGGTAGGGGTGAACGTGACTCTCATGATCGTTACAATGTGAATGGGCGAGGACACGGGCGAGGACGTGGATGTTTTGACAACAGAAGAGATATTAGTTACAGGAATAGAGACCGAAGTCGTAGCCCTGAAAGGGTTCGAACGTGGGATTATACCAGAAGTCATAGTAGAAGCAGAAGGGCTGTAGTGGGCCTTTGCCTTGAATCAGCTCCTAATGCCTAG 3075 0.4807 MKRIAPLSEDLLLFMGLFEVHSLITKYILSMATAEAPPASLVPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTAPPSPMPAEPHPAVSTPKLAPIPVAHSVQPGGVVAQHGQQLLQTSPQQGHQMSHLSQQHSPQVAQVSQQQPSQVAQAGQQQSSQSLQSMPQPGLQQVRQQQTLQPMSQQIPPQQMHHQMPQQAIQSQPFGQGATQDHGSYMGQPQAHQFCHQNLHYMPYSQSMHSNGQQNSQPIQHNMHGQPLENQQEFKAAFPKVEDVDFKNGSQVGLSPAQCQQKSALPLQGNQNIPAGISSVQLPRVGVNAGQSQPFGGMQQSSAMQSQLGSADLVYQHGHRFQNQVGPGMMHGQPSNVHPVDRKMGHEDNLRGRAVNEYYYNSGKEMPPVGSQQPNIAPIPISRNHQAYQQDMRIGGSHFQNAMPGGNGLNGVPGHSMHNMFNPPFGGPPPVASNSLTRPHVTDLSPAEIYRQQHEVTATGDNIPAPFMTFDAAGFPPEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFMILRQRRNNPLNGPTVLVLAPTRELATQIQDEAIKFGRSSRVSCTADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRSQEQGSKVIIFCSTKRLCDQLARSIGRNFGAAVIHGDKSQGERDWVLNQFRTGKSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGMSYTFISEQDWKHAGDLIKVLEGANQLVPPELRQMALRGSSNFGKDYGGMSRFDSGGGRWESSGRGGRGGTRDGGRGGMSHFDSGGGRWESSGRGGTRDGGFGGRGGMRNGGGFGGRGGMRDGPGVQEGRGDFFPGRGNRGRGMGGPRGGHVGWGRGERDSHDRYNVNGRGHGRGRGCFDNRRDISYRNRDRSRSPERVRTWDYTRSHSRSRRAVVGLCLESAPNA 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0575 1024 Pfam DEAD/DEAH box helicase 530 604 IPR011545 GO:0003676|GO:0005524
Lele21g0575 1024 Gene3D - 46 87 - -
Lele21g0575 1024 Gene3D - 611 665 IPR027417 -
Lele21g0575 1024 Pfam Helicase conserved C-terminal domain 687 795 IPR001650 -
Lele21g0575 1024 CDD SF2_C_DEAD 675 804 - -
Lele21g0575 1024 ProSitePatterns WW/rsp5/WWP domain signature. 56 82 IPR001202 GO:0005515
Lele21g0575 1024 SMART ww_5 51 84 IPR001202 GO:0005515
Lele21g0575 1024 MobiDBLite consensus disorder prediction 852 975 - -
Lele21g0575 1024 Gene3D - 479 610 IPR027417 -
Lele21g0575 1024 SMART helicmild6 711 795 IPR001650 -
Lele21g0575 1024 CDD WW 53 83 IPR001202 GO:0005515
Lele21g0575 1024 Gene3D - 666 837 IPR027417 -
Lele21g0575 1024 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 610 834 - -
Lele21g0575 1024 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 537 661 IPR014001 -
Lele21g0575 1024 MobiDBLite consensus disorder prediction 79 101 - -
Lele21g0575 1024 MobiDBLite consensus disorder prediction 951 975 - -
Lele21g0575 1024 ProSiteProfiles WW/rsp5/WWP domain profile. 50 84 IPR001202 GO:0005515
Lele21g0575 1024 MobiDBLite consensus disorder prediction 127 226 - -
Lele21g0575 1024 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 834 IPR001650 -
Lele21g0575 1024 FunFam ATP-dependent RNA helicase RhlB 665 838 - -
Lele21g0575 1024 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 506 534 IPR014014 GO:0003724
Lele21g0575 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 810 IPR027417 -
Lele21g0575 1024 MobiDBLite consensus disorder prediction 83 100 - -
Lele21g0575 1024 SUPERFAMILY WW domain 43 85 IPR036020 GO:0005515
Lele21g0575 1024 Pfam WW domain 52 82 IPR001202 GO:0005515
Lele21g0575 1024 SMART ultradead3 525 678 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0575 Lele-ChrLele21 3810856 3816854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0575 494 833 Eukaryotic Initiation Factors Gene Family AT3G19760 30.435 1.98e-48 176