Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0569 ATGGCTTCAATTTCTCTCTCCTTCTCTTCTTCCCTCCTTCCCTGTCCAATTTCTCAGGACAAATGCAAGATCCGCCATATCCCTAACCCCGTAACCCCCAACCCGCCTCTTCGGATTATCCGCTGCGCAACTGCGCCTCCATCGTCGAAAACTTCTTCTTCTTCGTCCTCTTCGGTCGCTAAAAAGAGGCACTGGAAAGTAGGTGAATTTCCGGGTGTTTCTGAAACTTCTTTACCTGGCCGTGAGAGGAGGCCTCCAATTAAGAATTTGAAGAAGAAGTTGGACCGAAAGGTCAAGGCTAAGGCCTGGGTCAACACTGTCACTGAATGCTTGGCTGATAGAATTGATAAAAAACAGTGGCTTCAAGCTCTTGAGGTATTCGAGATGCTTAGAGAGCAATCCTTTTACCAACCAAAAGAAGGGACTTACATGAAACTCATTGTATTGCTTGGAAGATGTGGCCAACCTCAACGTGCCCATCAGCTTTTCAACACTATGGTTGAAGAAGGTTGTCAGCCTACTTCCGAGCTTTACACGGCTTTGCTCTCAGTTTACTGTCGCAACAACCTTATTGATGAAGCATTTTCAACTCTTAATGAGATGAAGAACCTCCCTCTCTGCCAGCCTGATGTTTTCACTTACAGTACTTTAATTAAAGCTTGTGTGGATGCTTTGAAATTTGATTTGGTTGGGTCGCTGTATGAAGAGATGGCGGAAAGGTCCATCACCCCGAACACTGTCACTCAAAACATTGTCTTAAGTGGATATGGCAAGGCAGGGAAGTATGATCAGATGGAGAAAGTGCTGTCAAATATGCTGGATAGCACAACATGCAAGCCTGATGTGTGGACAATGAACACAATCATCAGTGTCTTTGGTAACAAGGGCCAGATTGATATGATGGAGAGATGGTATGAAAAGTTTCGTAATTTTGGGATAGAACCGGAAACACGCACTTTTAATATTTTGATTGGTGCTTATGGAAAGAAAAGAATGTACGACAAAATGTCCTCTGTGATGGAGTATATGCGCAAGCTTCAATTTCCTTGGACAACTTCAACTTACAACAATGTGATTGAGGCATTTGCAGCCGTCGGTGAGGCTAAACACATGGAATATACATTTGATCAGATGCGTGCCGAGGGTATGAAAGCCGATACCAAGACTTTCTGCTGCCTTATCAATGGTTATGCCAATGCAGGTCTCTTCCATAAAGTAATTAGCAGCGTTAACTTGGCTAAGAAGTTTGAGATACCCGAGACTGTCTCATTTTACAATGCCATCATCTCCGCATGTGCAAAGGCCGAGGATTTGATCGAAATGGAGAGAGTTTTCAACCGTATGAAGGATAACCTATGTCAACCAGATGACACTACATACTCTATCATGATCGAGGCGTATGGAAAAGAAGGTATGCGTGACAAAATTTACTATCTGGAGCAGGAAAAGCAGATGATCACTGAGGATATAAAAACTGAACAAGCTAATGAATGA 1494 0.4331 MASISLSFSSSLLPCPISQDKCKIRHIPNPVTPNPPLRIIRCATAPPSSKTSSSSSSSVAKKRHWKVGEFPGVSETSLPGRERRPPIKNLKKKLDRKVKAKAWVNTVTECLADRIDKKQWLQALEVFEMLREQSFYQPKEGTYMKLIVLLGRCGQPQRAHQLFNTMVEEGCQPTSELYTALLSVYCRNNLIDEAFSTLNEMKNLPLCQPDVFTYSTLIKACVDALKFDLVGSLYEEMAERSITPNTVTQNIVLSGYGKAGKYDQMEKVLSNMLDSTTCKPDVWTMNTIISVFGNKGQIDMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAAVGEAKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVNLAKKFEIPETVSFYNAIISACAKAEDLIEMERVFNRMKDNLCQPDDTTYSIMIEAYGKEGMRDKIYYLEQEKQMITEDIKTEQANE 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0569 497 Gene3D Tetratricopeptide repeat domain 370 496 IPR011990 GO:0005515
Lele21g0569 497 Gene3D Tetratricopeptide repeat domain 232 369 IPR011990 GO:0005515
Lele21g0569 497 Gene3D Tetratricopeptide repeat domain 82 224 IPR011990 GO:0005515
Lele21g0569 497 TIGRFAM PPR: pentatricopeptide repeat domain 247 282 IPR002885 -
Lele21g0569 497 TIGRFAM PPR: pentatricopeptide repeat domain 354 386 IPR002885 -
Lele21g0569 497 TIGRFAM PPR: pentatricopeptide repeat domain 212 246 IPR002885 -
Lele21g0569 497 TIGRFAM PPR: pentatricopeptide repeat domain 425 456 IPR002885 -
Lele21g0569 497 TIGRFAM PPR: pentatricopeptide repeat domain 284 315 IPR002885 -
Lele21g0569 497 TIGRFAM PPR: pentatricopeptide repeat domain 319 347 IPR002885 -
Lele21g0569 497 TIGRFAM PPR: pentatricopeptide repeat domain 177 203 IPR002885 -
Lele21g0569 497 TIGRFAM PPR: pentatricopeptide repeat domain 142 174 IPR002885 -
Lele21g0569 497 MobiDBLite consensus disorder prediction 35 63 - -
Lele21g0569 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Lele21g0569 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Lele21g0569 497 Pfam PPR repeat 142 171 IPR002885 -
Lele21g0569 497 Pfam PPR repeat 250 274 IPR002885 -
Lele21g0569 497 Pfam PPR repeat family 280 327 IPR002885 -
Lele21g0569 497 Pfam PPR repeat family 422 467 IPR002885 -
Lele21g0569 497 Pfam PPR repeat family 178 222 IPR002885 -
Lele21g0569 497 Pfam PPR repeat family 352 399 IPR002885 -
Lele21g0569 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Lele21g0569 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Lele21g0569 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 280 IPR002885 -
Lele21g0569 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Lele21g0569 497 MobiDBLite consensus disorder prediction 45 61 - -
Lele21g0569 497 PANTHER EXPRESSED PROTEIN 48 492 IPR044179 GO:0003729
Lele21g0569 497 Coils Coil 488 497 - -
Lele21g0569 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Lele21g0569 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0569 Lele-ChrLele21 3781007 3782893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0569 284 495 Glycosyltransferase AT1G05670 23.182 7.34e-12 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0569 21 3781007 3782893 Lele21g0569 21 3781007 3782893 ECH
Lele21g0569 21 3781007 3782893 Lele23g1475 23 19320813 19323588 hybridization
Lele21g0569 21 3781007 3782893 Lele24g0565 24 3755092 3758730 hybridization