Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0543 ATGAGAACGGAAGAACAGGTTGATGGCCACCAAACCCAGTCATCATCATCATCTTCTTCTCCTTCAATTGATAGCAGTAATTACCTTTCTGGGACTGAGAAGCCTGCAGCTTCTTCTTCTTGTTCTTCTTCCCACTCTTCCTCTTCGTGTCTCTCAAGTGTTTGTAGAAATGCTAACAGTTCCAGAACTGATTTGATCACTGACCTCAGACTTGGTCTTACCATTTCTCCTTCTCAACCTGGCCTTTCCAATTCAAATCCCAGGTCAAGGAATCGAACTTCAGATTGGCCTCCAATCAAGTCCATACTGAGAAGCACTCATGTGGAGAAACAGAACCAGTGGAGCCAAAGGCCCTCCTTATTCGTCAAAGTGTACATGGAAGGCATACCCATTGGTAGAAAGCTGAACCTTATGGCACATCATAGCTATGATGGGCTTGTCAGAGCCCTAGGCCACATGTTCAGGACCACCATTCTCTGCCCTAATTCCCAACCGCTTCATTCTGGGCATTTTCACGTGTTGACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCATGGGAGATGTTTTTGACCAGTGTGAAAAGGCTGAAGATCACCAGAGCAAACAGATGCTAG 630 0.4603 MRTEEQVDGHQTQSSSSSSSPSIDSSNYLSGTEKPAASSSCSSSHSSSSCLSSVCRNANSSRTDLITDLRLGLTISPSQPGLSNSNPRSRNRTSDWPPIKSILRSTHVEKQNQWSQRPSLFVKVYMEGIPIGRKLNLMAHHSYDGLVRALGHMFRTTILCPNSQPLHSGHFHVLTYEDQEGDWMMVGDVPWEMFLTSVKRLKITRANRC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0543 209 Gene3D - 114 209 - -
Lele21g0543 209 MobiDBLite consensus disorder prediction 8 48 - -
Lele21g0543 209 ProSiteProfiles PB1 domain profile. 119 208 IPR000270 GO:0005515
Lele21g0543 209 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 207 IPR003311 GO:0005634|GO:0006355
Lele21g0543 209 Pfam AUX/IAA family 41 205 IPR033389 -
Lele21g0543 209 MobiDBLite consensus disorder prediction 1 48 - -
Lele21g0543 209 MobiDBLite consensus disorder prediction 76 98 - -
Lele21g0543 209 SUPERFAMILY CAD & PB1 domains 111 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0543 Lele-ChrLele21 3603441 3604748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0543 109 203 B3 DNA Binding Superfamily AT2G46530 35.417 3.13e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele21g0543 AUX_IAA 3.8e-34 CL0072