Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0529 ATGGCGTTTCAAGACTTCGATCTCATCACTGAGAAAAGAAAAAATGATAGAAAACAGAAGCTCAAGCGCAGAATCGCCATCGGCGCAGTTTGCACCATCGTCATCATTGGTCTTATAGGAGCAGCCGCTTTCGTAATCGTCAGCAATAACAGCGAAGAAGAAAGCGAAGTCAATGATCATAGCAAGAAATCCCCATCGTCGTCGTCCTCCTCCTCTTCCTCAAAGAGTGAATCCAACCAAATTTCTATAGCAGCGAAACTCGTGAAGACCATTTGCAGTTCCACAGACTATCAGGAAAAATGCGAGACAAGTCTCACCAAGGAAGTGAAAAAGGAACCGAAACTAGCACAACCCAAAGACGTCCTTAAACTTGCTATCAGTGTCGCACAGGAGGAGGTTAATAAGGCCATCAATAAAACTAAAAGCCTAAACTTTCAATCCGATAAAGAGAAAGGGGCGTACGAGGATTGCACGAAGCTTCTGGATCGTGCGAAATACGATCTAGGGAATTCATCCTCACATGTTGGATCAATCGACATGACCAAGCTGACGTCCTCATCATCGGATTTGAACAGTTGGCTCAGTGCAGTTATCGCATTCCAGGGAGCTTGCCTTGATGGGTTTGAAGATGGGAAACTGAAGACGGATATGAAGAGTGCGTTTAATGATTCAACGGAGTATGTTAGCAATTCTCTTGCAATTCTATCGCAGTTAGGCTCCGTTGTTTCTTCGGCATTAAAGGAAGGTGCTAGTCGTCATTTGCTGTCGTCCAGTGATAAAGATCTTCCGGAGTGGATGAACGATGAAGAACGACGGATGCTGAAGGCGGCGGATGATAAACCTACTCCTAACGTCACCGTCGCCAGGGACGGCAGTGGAGACTTCAAAACCATCTCCGAAGCTTTAAAAGCCATACCACAAAAATACGATGGACGGTATGTGGTTTATGTTAAAGCAGGAATATATGACGAGACTGTGTTAATAGAAGGGCGAATGGTAAACGTAACCCTTTATGGCGATGGATCACAAAAAAGCATCATCACCGGCAACAAGAACTACGTAGATGGAGTAAGGACTTTCCAAACTGCATCATTTGCGGTAGAAGCAGATGGGTTCTTAGGGAAAGCAATGGGGTTCAGAAACACAGCCGGTCCAGAGAAGCACCAAGCGGTAGCAGCAAGAGTGCAAGGAGATCGTGCAGTGTTCGTGAACAGTCGTTTCGAAGGGTACCAAGACACTCTCTACGCACTAGCCCACCGGCAATTTTATCGGAGCTGCGTGATCTCCGGCACGGTGGATTTCATCTTTGGCGATGCAGCTGCCGTGTTCCAGAACTGCATAATGAACATAAGGAAACCCTTAGATAACCAGCAGAACATAGTAACAGCCCAAGGAAGAATGGACCCACAAGAAAAAACCGCCATCGTTATACAAAACTGTCAGATCAAGGCCGACGACTCACTCGCCGCTGTGAAAGGTAAGTTCAAGACCTACCTCGGGCGGCCATGGAAGGAGTACTCGAGAACCATCGTCATGGAATCCGAGATCGATGAAGTCATCGACCCCGAAGGGTGGATGGAATGGGAAGGCGACTTTGCACTCAAAACTTTGTTCTACGCTGAGTTTAACAATACAGGACCGGGTTCGAACACTGATAATAGAGTGAAGTGGGGTGGCTACAAAAAAATCACTAGGGACGAGGCTAGCAACTTCACCGTCGAATCTTTCTTGTCCGGTAATTGGCTCTCTGGGTTCAACATACCAGAAGAATTTGATTCTTGGCCAGAAATGGAGCAGCAAAGGCGCCAAAAGGAGGCCCAACGGGAGGAAGAAGCTGAAGAGCTACAACATGGCCCTTTATCCGTTGAAGAGCTTCAGGCATCAGGCATATCTGCCACCGACGTTAAGAAACTTAAAGATGCCGGTCTTTGGACGGTTGAATCTGTGGCTTTCTCTCCTAGAAAGGATCTTCTGCAGATTAAAGGAATCAGTGACGCTAAAGTTGATAAGATCATTGAAGCAGCTTCTAAATTGGTGCCGTTGGGTTTCACTAGTGCTGCCCAACTTCATTCCCAGAGACTTGCAATTATTCAAATAACATCAGGATCAGAAGAGCTAGACAAGATATTGGAAGGAGGGATGGAGACAGGATCTATAACTGAGCTATATGGTGAATTTCGATCAGGGAAGACTCAGTTGTGTCATACTCTGTGTGTCACTTGCCAACTGTCACTTGATCAAGGAGGAGCTGAGGGCAAAGCTATGTACATTGATGCAGAGGGTACCTTTAGACCACAGCGACTCTTACAAATAGCAGAGAGGTTTGGACTAAATGGAGCTGATGTGTTGGAAAATGTTGCCTATGCTAGAGCATATAACACTGATCATCAATCACGGCTTCTGCTTGAAGCAGCTTCAATGATGGTAGAAACAAGGTTTGCTCTGGTAATAGTTGACAGTGCTACTGCGCTCTATAGGACAGATTTTAGCGGAAGGGGGGAACTTTCTGCCCGGCAAATGCATCTCGCGAAGTTCCTTCGGGGCCTTCAGAAATTAGCAGATGAGTTTGGTGTGGCTGTTGTGATAACAAACCAAGTAGTTTCACAAGTAGATGGTTCTGCAGTCTTTGCCGGACCTCAAATCAAGCCTATTGGTGGCAACATTATGGCTCATGCAACAACTACAAGGTCCCCACTTCAAGATATCAAGCTACATCTTCGAAAAGGTAGAGGGGAAGAACGCATATGTAAAGTGATAAGTTCTCCTTGTTTGGCTGAGGCTGATGCAAGGTTTCAGATATCTCCAGAAGGCGTTACTGATGTTAAAGACTGA 2832 0.4601 MAFQDFDLITEKRKNDRKQKLKRRIAIGAVCTIVIIGLIGAAAFVIVSNNSEEESEVNDHSKKSPSSSSSSSSSKSESNQISIAAKLVKTICSSTDYQEKCETSLTKEVKKEPKLAQPKDVLKLAISVAQEEVNKAINKTKSLNFQSDKEKGAYEDCTKLLDRAKYDLGNSSSHVGSIDMTKLTSSSSDLNSWLSAVIAFQGACLDGFEDGKLKTDMKSAFNDSTEYVSNSLAILSQLGSVVSSALKEGASRHLLSSSDKDLPEWMNDEERRMLKAADDKPTPNVTVARDGSGDFKTISEALKAIPQKYDGRYVVYVKAGIYDETVLIEGRMVNVTLYGDGSQKSIITGNKNYVDGVRTFQTASFAVEADGFLGKAMGFRNTAGPEKHQAVAARVQGDRAVFVNSRFEGYQDTLYALAHRQFYRSCVISGTVDFIFGDAAAVFQNCIMNIRKPLDNQQNIVTAQGRMDPQEKTAIVIQNCQIKADDSLAAVKGKFKTYLGRPWKEYSRTIVMESEIDEVIDPEGWMEWEGDFALKTLFYAEFNNTGPGSNTDNRVKWGGYKKITRDEASNFTVESFLSGNWLSGFNIPEEFDSWPEMEQQRRQKEAQREEEAEELQHGPLSVEELQASGISATDVKKLKDAGLWTVESVAFSPRKDLLQIKGISDAKVDKIIEAASKLVPLGFTSAAQLHSQRLAIIQITSGSEELDKILEGGMETGSITELYGEFRSGKTQLCHTLCVTCQLSLDQGGAEGKAMYIDAEGTFRPQRLLQIAERFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALVIVDSATALYRTDFSGRGELSARQMHLAKFLRGLQKLADEFGVAVVITNQVVSQVDGSAVFAGPQIKPIGGNIMAHATTTRSPLQDIKLHLRKGRGEERICKVISSPCLAEADARFQISPEGVTDVKD 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0529 943 MobiDBLite consensus disorder prediction 62 77 - -
Lele21g0529 943 FunFam DNA repair protein RAD51 homolog 618 690 - -
Lele21g0529 943 FunFam DNA repair protein Rad51 homolog 694 943 - -
Lele21g0529 943 Pfam Plant invertase/pectin methylesterase inhibitor 87 234 IPR006501 GO:0004857
Lele21g0529 943 Gene3D - 695 943 IPR027417 -
Lele21g0529 943 Pfam Pectinesterase 284 580 IPR000070 GO:0030599|GO:0042545
Lele21g0529 943 ProSiteProfiles RecA family profile 2. 873 943 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lele21g0529 943 Pfam Rad51 681 941 IPR013632 -
Lele21g0529 943 MobiDBLite consensus disorder prediction 595 620 - -
Lele21g0529 943 MobiDBLite consensus disorder prediction 54 77 - -
Lele21g0529 943 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Lele21g0529 943 TIGRFAM PME_inhib: pectinesterase inhibitor domain 70 238 IPR006501 GO:0004857
Lele21g0529 943 TIGRFAM recomb_RAD51: DNA repair protein RAD51 622 943 IPR011941 GO:0000150|GO:0000724|GO:0003690|GO:0003697|GO:0008094|GO:1990426
Lele21g0529 943 Gene3D - 618 690 - -
Lele21g0529 943 Gene3D Invertase/pectin methylesterase inhibitor family protein 84 240 IPR035513 -
Lele21g0529 943 Coils Coil 597 617 - -
Lele21g0529 943 CDD PMEI-like_3 90 240 - -
Lele21g0529 943 FunFam Pectinesterase 84 239 - -
Lele21g0529 943 SMART AAA_5 716 903 IPR003593 -
Lele21g0529 943 FunFam Pectinesterase 278 592 - -
Lele21g0529 943 Gene3D - 278 591 IPR012334 -
Lele21g0529 943 ProSiteProfiles RecA family profile 1. 695 866 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lele21g0529 943 SMART PMEI_2 83 234 IPR006501 GO:0004857
Lele21g0529 943 MobiDBLite consensus disorder prediction 595 618 - -
Lele21g0529 943 CDD Rad51_DMC1_radA 699 938 IPR033925 GO:0003677
Lele21g0529 943 PANTHER PECTINESTERASE 47 583 - -
Lele21g0529 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 942 IPR027417 -
Lele21g0529 943 SUPERFAMILY Pectin lyase-like 282 584 IPR011050 -
Lele21g0529 943 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 86 238 IPR035513 -
Lele21g0529 943 SUPERFAMILY Rad51 N-terminal domain-like 614 681 IPR010995 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0529 Lele-ChrLele21 3503444 3508869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0529 1 588 Carbohydrate Esterase AT2G26450 47.300 0.0 585
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0529 21 3503444 3508869 Lele21g0529 21 3503444 3508869 ECH
Lele21g0529 21 3503444 3508869 Lele24g0529 24 3495638 3498109 hybridization