Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0507 ATGGTTCGGTGTTCTGCTGTCAGACACGTAAGAATAGGTGGCCTTACTCAAAGGTCGTTCCGGGGTTTGATTGTTAAAGCCGCAACTGTTGTTGCCCCCAAGTATACCTCAATTAAGCCCTTGGGTGACAGAGTGCTGGTAAAAATTAAGGATTCTGAAGAGAAGACTGATGGCGGTATTTTACTTCCCACAACTGCTCAAACAAAACCTCAAGGCGGTGAAGTGGTTGCCATTGGAGAGGGAAAGACAGTTGGGAAGAGCAAAGTTGACATTGCTGTGAAGACTGGCGCACAAGTTGTGTATTCAAAGTATGCTGGGACTGAGGTGGAGTTTAATGGTTCAAAGCATCTAATACTAAAGGACGATGACATTGTTGGTATCCTTGAAACAGATGATATCAAGGATCTTAAACCTTTGAATGATAGAGTGTTGATCAAGATTTCAGAGGCCGAGGAAAAAACTGCTGGGGGTTTGTTACTGACAGAGGCAACGAAAGAGAAACCATCTACTGGAACGGTGATAGCAGTTGGACCAGGGCCTCTAGATGAGGAAGGCAACAGAAAACCGTTGTCTGTGAGTCCTGGAAACTCTGTTTTGTACTCCAGATACGCGGGGAATGACTTCAAGGGCAAGGATGGTGACTACATTACCTTGAGGGCCTCAGATGTCATGGCAGTCCTTACCTAG 687 0.4571 MVRCSAVRHVRIGGLTQRSFRGLIVKAATVVAPKYTSIKPLGDRVLVKIKDSEEKTDGGILLPTTAQTKPQGGEVVAIGEGKTVGKSKVDIAVKTGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDDIKDLKPLNDRVLIKISEAEEKTAGGLLLTEATKEKPSTGTVIAVGPGPLDEEGNRKPLSVSPGNSVLYSRYAGNDFKGKDGDYITLRASDVMAVLT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0507 228 FunFam 10 kDa chaperonin 134 228 - -
Lele21g0507 228 Hamap Co-chaperonin GroES [groES]. 135 228 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 CDD cpn10 136 227 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 FunFam 20 kDa chaperonin, chloroplastic 31 130 - -
Lele21g0507 228 Hamap Co-chaperonin GroES [groES]. 37 129 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 PIRSF Cpn21 2 228 IPR017416 GO:0006457|GO:0046914|GO:1901671
Lele21g0507 228 SUPERFAMILY GroES-like 36 129 IPR011032 -
Lele21g0507 228 ProSitePatterns Chaperonins cpn10 signature. 136 160 IPR018369 GO:0005524|GO:0006457
Lele21g0507 228 PRINTS 10kDa chaperonin signature 94 106 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 PRINTS 10kDa chaperonin signature 115 128 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 PRINTS 10kDa chaperonin signature 38 53 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 PRINTS 10kDa chaperonin signature 60 81 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 SMART Cpn10_2 135 227 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 SMART Cpn10_2 37 128 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 SUPERFAMILY GroES-like 134 227 IPR011032 -
Lele21g0507 228 CDD cpn10 37 128 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 ProSitePatterns Chaperonins cpn10 signature. 38 62 IPR018369 GO:0005524|GO:0006457
Lele21g0507 228 PANTHER 10 KDA HEAT SHOCK PROTEIN 134 226 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 Pfam Chaperonin 10 Kd subunit 38 127 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 Pfam Chaperonin 10 Kd subunit 136 226 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele21g0507 228 Gene3D GroES chaperonin 30 130 IPR037124 GO:0006457
Lele21g0507 228 Gene3D GroES chaperonin 131 228 IPR037124 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0507 Lele-ChrLele21 3325043 3326978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0507 2 228 Calmodulin-binding Proteins AT5G20720 76.522 1.38e-124 351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0507 21 3325043 3326978 Lele21g0507 21 3325043 3326978 ECH
Lele21g0507 21 3325043 3326978 Lele23g1540 23 19809550 19811591 hybridization
Lele21g0507 21 3325043 3326978 Lele24g0508 24 3312832 3318999 hybridization