Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0467 ATGTCCGAAAGCTTCGACTCATCATCAATCGTCTACACACACTCCTCCATTCCACCGCTTTACTTCTCTTGTTCTACTACAGAGTATGCTTCTTCTTCCAAGAAACCAAGAGAAGCCCCTTGTTGTCCTGGATTCTTGTTTTCGCATCAGAGATCCTTCTATCCTTCATTTGGATTCTTGGTCAAGTTTATCGATGGCGTCCCGTTTCAAGAACCGTGTTTCCAGAAAGATTGCCAGAAGATGGCAAGCTTCCCGCCATTGATAAAGTACAGAGTCAAGTGTAGATGTCCCAAGGCTTTCTTCTCTGCCTTGGAGACGGAGGATAATGATTTTGCTGGGAGTAGTTTGTTTATGGCAGAGAAGCAAAAGATCAAGGAAAAATATGAAGCTTTTGAGGAGGAGATAAAGAGAGCCAGAGAAGGCAGGGCCCCAAGCAATGATGAGCGAGATCACCCATCTCTCATTGAGGTGATACAAGACAATACAAGTGAAGTGGAACAAGTGGAATTACCTCTTCTTGTCTACGTTTCCCGGGAGAAAAGGCCTTCTCGGACCCACCATTTTAAGGCTGGAGCACTTAATGCTTCTATATTAAAAGGGCCTCTTTATGTGGAAAAATCACCGACAAAGGTATTTGAGCATGATGTTATGCCATTTATTGCTTCAAAAACAGAAAGTTTATGCCTTTATGGTGAATATTCAAATATGTTAGGCACTGACCTTATGGAACTTCGACAATGTTTCGGCTCATCCAATGAGTTCATCAAATCCCTGAACCAGAACTACATTTCTTCTATTATGGAGGCCGGTGGGCATGCATTGCTCGAAGAGCCTCGGCTACTGGCTTCCTGTAACTATGAAATCGGAACTAAATGGGGTCAAGAGGTTGGTTTCTTGTATGATTCTGTCGTTGAAGATTATCTCACTGGGTTCATCTTGCATTGCAATGGCTGGACTTCAGTATTCTGTGAACCATCAAGGCCACAGTTCCTTGGATCAGCCAGCACGAATTTGAATGATGTGCTGATTCAAGGATCCAGGTGGAGTTCAGGACTGTTTGAAAATGGTATAAGCAAGTACTGTCCCCTTATATTTGGGCCTCTCAGGATGTCTCTTCTTCAGTGCATGTGCTTCGCAGAACTCACATATTACCCTTTATATTGCTTGCCTCTTTGGTGCTTCGCTACCATCCCTCAACTCGCTTTAATACATGCAACTTCCCTTTACCCTAAGGTGTCAGAGCCATATTTCCTGGTGTTCTTGTTCATCTTTGTGTCAGCACTTTCTAAGCATTTAGTGGAAGTCATTATAAGTGGAGGAACAGTATATCAATGGATTAATGAAGAGAGGGTATGGATGATAAAATCAGTGACATGTCATGCATATGGATGTTTGGATGCTGTGATGAAGAAATTTGGCATAAGAGAAGCTAGTTTCTTGCCCACCGATAAAGTGGAGGACGATGAGAAAACTACGCTATATCAAATGGACAAGTTTGATTTCAGGGCATCAAACATATTCCTCGTACCATTGATTGTCCTCCTTACCCTAAACATATCATGCTTCACAGTGGCTGCTTATAGGGTTGTTTCTGTGGGTGATTGGGACGGTATCTTCATTCAGATGATCCTTTCAGCTTACATTATTGTTCTAAATTATCCTGTTCTTGAAGGGCTGGTCATTAGGAGAGATAAGGGGCGTATGTCATTTTCAGTAGCTATAATATTTGCCGTCCTAGCCACTCTTGTGGGTTTGCCTTTGGCTTGTATAGTTGATGCTCTCTCTTTGGAAAACTCTACTTACCAGTTACTATTGCCCTCAGGCTTCTCATTCATTGCCATCACTCTTCTTCCTCAGGAGATATCGAAGATGGAGAGAAACAGTTTGAACAGCAACAAGAACCAGGTAATGAAAGAATACTGGGACTGCAAATCTCAGATCAGCTATGGAGGAGATGATTATATAAATGGATTCTCGTGGCCTCCAAGATCTTACACTTGTAGCTTCTGCAAGAGGGAATTCAGATCTGCTCAAGCCCTTGGTGGCCATATGAATGTTCATAGGAGGGACAGAGCCAGGCTCAGGCAGCAGTCACCTCCCACCACTACAACTCATGACAGTCACTCCCCCATGCTCAACCTAAATCTTAACCCTACCTCTGGTCCAGGGTTTTCAACCTCAACTATGTCCTTATTACCATCATCCTCTTCTACAATGCTCAGAAAACCATTCCCTGCTAGCACTACTGTACCCTCCTTCGTTTCTCCTATACTTTCTTCTTCATCTTCTCCTCCCCCTGCATCTACATCTCCTTCTTATGATCTGAAAAAATGGGCTGTGGACGGTATCATGTTGAACCCTTCAAGCACCAAGGCCTCGGAATCTACAAAAATGAAGAATATTGCAAATTCTTTATCGGGGTTTGGAGACTGTAATGACCCTTCTTTTGTGCAAGAAGTTGGTTGCAAAGTGGTAAAGAAGGCTGAGATCATTAGGTTGGACTTGCATATAGGTTTACTTAGCGATTCCAAGGATGATTTAGATCTGGAGCTTCGATTGGTTAAGGCGCGTTATCCTTTCAAAATCTTGAAGGTTTTCAATCTTCTGTTTGTAGCGCTAGCCTGTCGTTTTGTCAAATCTTTGAGGGGCGTTCCAAGTAACTTGGTTTTGGTGAACGGGAATGCTATAATGAATATGCATAGCAAGAGAACGAAGTGCCCTTATCAATTGAGATTTGAGAGAATATTCAATGCAGGAGAAGAGAGAGCAACCCAATTGGTTACACAGAGAAAGAGAATCAATTCCCTGGGTAGGGATGCAGCCTACGAAGCTGGGCGAGCTGATGATAATGATCAATCTAGGCCATCAATTGGATTTGGATACCTCTTTCATGCTCCACACTGTTTAAGTTGTTCTCTTCTACGGTCTCAGCACACTATATAA 2943 0.4285 MSESFDSSSIVYTHSSIPPLYFSCSTTEYASSSKKPREAPCCPGFLFSHQRSFYPSFGFLVKFIDGVPFQEPCFQKDCQKMASFPPLIKYRVKCRCPKAFFSALETEDNDFAGSSLFMAEKQKIKEKYEAFEEEIKRAREGRAPSNDERDHPSLIEVIQDNTSEVEQVELPLLVYVSREKRPSRTHHFKAGALNASILKGPLYVEKSPTKVFEHDVMPFIASKTESLCLYGEYSNMLGTDLMELRQCFGSSNEFIKSLNQNYISSIMEAGGHALLEEPRLLASCNYEIGTKWGQEVGFLYDSVVEDYLTGFILHCNGWTSVFCEPSRPQFLGSASTNLNDVLIQGSRWSSGLFENGISKYCPLIFGPLRMSLLQCMCFAELTYYPLYCLPLWCFATIPQLALIHATSLYPKVSEPYFLVFLFIFVSALSKHLVEVIISGGTVYQWINEERVWMIKSVTCHAYGCLDAVMKKFGIREASFLPTDKVEDDEKTTLYQMDKFDFRASNIFLVPLIVLLTLNISCFTVAAYRVVSVGDWDGIFIQMILSAYIIVLNYPVLEGLVIRRDKGRMSFSVAIIFAVLATLVGLPLACIVDALSLENSTYQLLLPSGFSFIAITLLPQEISKMERNSLNSNKNQVMKEYWDCKSQISYGGDDYINGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQQSPPTTTTHDSHSPMLNLNLNPTSGPGFSTSTMSLLPSSSSTMLRKPFPASTTVPSFVSPILSSSSSPPPASTSPSYDLKKWAVDGIMLNPSSTKASESTKMKNIANSLSGFGDCNDPSFVQEVGCKVVKKAEIIRLDLHIGLLSDSKDDLDLELRLVKARYPFKILKVFNLLFVALACRFVKSLRGVPSNLVLVNGNAIMNMHSKRTKCPYQLRFERIFNAGEERATQLVTQRKRINSLGRDAAYEAGRADDNDQSRPSIGFGYLFHAPHCLSCSLLRSQHTI 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0467 980 Gene3D Classic Zinc Finger 661 713 - -
Lele21g0467 980 Pfam Cellulose synthase 237 585 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lele21g0467 980 Pfam Cellulose synthase 88 197 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lele21g0467 980 Coils Coil 121 141 - -
Lele21g0467 980 MobiDBLite consensus disorder prediction 685 728 - -
Lele21g0467 980 ProSiteProfiles Zinc finger C2H2 type domain profile. 665 692 IPR013087 -
Lele21g0467 980 ProSitePatterns Zinc finger C2H2 type domain signature. 667 687 IPR013087 -
Lele21g0467 980 Pfam C2H2-type zinc finger 665 689 - -
Lele21g0467 980 SUPERFAMILY beta-beta-alpha zinc fingers 662 691 IPR036236 -
Lele21g0467 980 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 89 196 - -
Lele21g0467 980 MobiDBLite consensus disorder prediction 696 728 - -
Lele21g0467 980 SMART c2h2final6 665 687 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0467 Lele-ChrLele21 3003997 3012931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0467 148 580 Glycosyltransferase AT4G23990 29.363 5.54e-72 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele21g0467 Cellulose_synt 1.6e-56 CL0110