Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0462 ATGGATCTTGCAGGTAGGAGATTCTTGATCTCTGGTTCTGGTCCACAACCCCTTTCGCCATTGTCCAGCCCAGTGAGTTCATTCCTTCGCCCACATTCGCATTCTGCGAGTACCAGTTTTCCCATTATAGCTATCGCTATAATAGGGATACTCGCCACTGCTTTCTTGCTCGTTAGCTACTATATCTTCGTCATCAAGTGCTGCCTCAATTGGCATCGCATAGATCTCCTAAGACGGTTCTCTCCATCCCGGCGTCGAGACGAGCCACCGATGACATATTCGCCGGCGGGCACGGAGCCTCGAGGACTCGACGAGGCCGTGATCCGATTAATCCCTGTCATCCATTACAAAGCGGAGGAAAACAGAGAATCCGGAGAGCGAAGCTTCTCGGAATGCTCTGTTTGCTTGAACGAGTTCCGCGAGAAGGAGAAGCTGAGGATTATACCGAATTGCAGCCACGTGTTCCACATAGATTGCATCGACGTTTGGCTTCAGAACAACGCCAATTGCCCACTCTGCAGAACAAGCATTTCCCTATCGACCAGATTCCAAGTCGATCAGATTCTAAATCCCAGACCCTCCTGCCAAGATAGACGCCCGTATGGCGAAAATCTCAACGGGGGGGATGAAGATTTTGTTGTGATCGAACTTAGCACTATCGGTCACGATAGAGACCAGAACTCGAACGGAACACAGGAAGGAGAAAACCCAGCACGAGAGGTGACTCCTTCTCCCAGGAAAATAATGGAGCCGAAGAAAAAAGCATGGAAGTTTCAGAAAGTGACGAGCATGGGAGATGAGTGCATCGACACAAGAGGTAGTAAAGATGAGCAATTCTCCGTACAGCCCATGAGGAGGTCATTCTCCATGGATTCTTCAGGGGATAGGCAGTTGTACATGGCAGTTCAAGAAGCTCTGAAGAAACAGAACAGGGAACAAGCGAGTGAGGTATCATCGTCCTCCATTAATGAAGGGTGTAGTAGTAGCGGTGGTGGTAGAGTGAAGAGGTCATTCTTTTCCTTCGGACATGGTAGCAGTAGATCCAGAAGTTCAGTCCAACCTGTTCATGTGGACCACTAA 1080 0.4926 MDLAGRRFLISGSGPQPLSPLSSPVSSFLRPHSHSASTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRDEPPMTYSPAGTEPRGLDEAVIRLIPVIHYKAEENRESGERSFSECSVCLNEFREKEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLSTRFQVDQILNPRPSCQDRRPYGENLNGGDEDFVVIELSTIGHDRDQNSNGTQEGENPAREVTPSPRKIMEPKKKAWKFQKVTSMGDECIDTRGSKDEQFSVQPMRRSFSMDSSGDRQLYMAVQEALKKQNREQASEVSSSSINEGCSSSGGGRVKRSFFSFGHGSSRSRSSVQPVHVDH 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0462 359 CDD RING-H2_PA-TM-RING 131 174 - -
Lele21g0462 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 179 IPR013083 -
Lele21g0462 359 MobiDBLite consensus disorder prediction 221 247 - -
Lele21g0462 359 PANTHER RING-H2 FINGER PROTEIN ATL16 23 355 IPR044600 GO:0016567|GO:0016740
Lele21g0462 359 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lele21g0462 359 MobiDBLite consensus disorder prediction 306 359 - -
Lele21g0462 359 MobiDBLite consensus disorder prediction 312 334 - -
Lele21g0462 359 FunFam E3 ubiquitin-protein ligase ATL6 92 180 - -
Lele21g0462 359 SUPERFAMILY RING/U-box 131 182 - -
Lele21g0462 359 MobiDBLite consensus disorder prediction 221 238 - -
Lele21g0462 359 Pfam Ring finger domain 131 174 IPR001841 -
Lele21g0462 359 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0462 Lele-ChrLele21 2980929 2982008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0462 31 358 C3H Transcription Factor Family AT1G04360 51.811 7.80e-102 303