LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g0461	ATGGAGGCGGATGGGTCGGGATCTAGAAGGGCCACGGATGCACAGGGTGGCGGAGATGTCCGGTACCGGGGAGTGAGGAGGCGGCCTTGGGGGAAGTTCGCGGCGGAGATCCGGGACTCCGCGAGGCAGGGCCAGAGGGTGTGGCTAGGGACTTTCAACACGGCGGAGGATGCCGCCAGGGCCTACGACCAAGCCGCTTATGCCATGAGAGGCCCATTTGCTATCCTCAACTTCCCCGATGAATACCCACTTTCCGCCGGTGGTGCTGACACCATGGCCGACTATCCTCCCTCTGCTTCTTCCCCGCGGAGTAGTAATGCGCCTGTAAAACAAGTGTTCGAGTTCGAGTACTTGGATGATAAATTGCTGGAGGAGCTTCTTGATTTTGAAGTCAACAGGATGACGGGAAATTGA	414	0.5821	MEADGSGSRRATDAQGGGDVRYRGVRRRPWGKFAAEIRDSARQGQRVWLGTFNTAEDAARAYDQAAYAMRGPFAILNFPDEYPLSAGGADTMADYPPSASSPRSSNAPVKQVFEFEYLDDKLLEELLDFEVNRMTGN	137

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g0461	137	CDD	AP2	21	80	IPR001471	GO:0003700\|GO:0006355
	Lele21g0461	137	FunFam	Ethylene-responsive transcription factor 2	21	80	-	-
	Lele21g0461	137	ProSiteProfiles	AP2/ERF domain profile.	21	79	IPR001471	GO:0003700\|GO:0006355
	Lele21g0461	137	Gene3D	AP2/ERF domain	20	80	IPR036955	GO:0003700\|GO:0006355
	Lele21g0461	137	Pfam	AP2 domain	21	71	IPR001471	GO:0003700\|GO:0006355
	Lele21g0461	137	PRINTS	Ethylene responsive element binding protein signature	45	61	IPR001471	GO:0003700\|GO:0006355
	Lele21g0461	137	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355
	Lele21g0461	137	SMART	rav1_2	21	85	IPR001471	GO:0003700\|GO:0006355
	Lele21g0461	137	SUPERFAMILY	DNA-binding domain	21	81	IPR016177	GO:0003677
	Lele21g0461	137	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lele21g0461	137	PANTHER	DNA-BINDING DOMAIN	15	128	IPR044808	GO:0003700\|GO:0009873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g0461	Lele-ChrLele21	2974059	2974472	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g0461	21	130	AP2-EREBP Transcription Factor Family	AT3G23230	60.163	7.46e-39	126

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele21g0461		AP2	7.7e-16	CL0081