LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g0460	ATGGATGGGCACAAGGGAAAGCAGGAGAAGGCAAAGGAGGATGTGCGGTACCGGGGCGTCCGGAGGCGGCCGTGGGGGAAGTACGCGGCTGAGATTAGGGACCCGTCGAAGCAAGGGGCGAGGCTGTGGCTGGGGACGTTTGATACGGCGGAGGATGCAGCCAGAGCCTACGATAGGGCTGCCTTCAACATGAGGGGTCATCTAGCAATCCTTAATTTCCCTAATGAGTATTACTCTCAACTGAGGCCCCCATCATATGCTCCCTTCTTTGTGCCTCCTCCTCCTCCTTCTCATGGAACTGCAAGCTCATCGTCCGGTTCGCTGAGGAAGCCAGTTTTTGAGTTTGAGTATCTGGATAATCAGGTGCTGGAAGACCTGCTTGAGTCAGAAGAGGAGAGAAAGAAAAGGATGAGAGATTGA	420	0.5429	MDGHKGKQEKAKEDVRYRGVRRRPWGKYAAEIRDPSKQGARLWLGTFDTAEDAARAYDRAAFNMRGHLAILNFPNEYYSQLRPPSYAPFFVPPPPPSHGTASSSSGSLRKPVFEFEYLDNQVLEDLLESEEERKKRMRD	139

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g0460	139	Gene3D	AP2/ERF domain	15	75	IPR036955	GO:0003700\|GO:0006355
	Lele21g0460	139	SUPERFAMILY	DNA-binding domain	16	75	IPR016177	GO:0003677
	Lele21g0460	139	SMART	rav1_2	16	80	IPR001471	GO:0003700\|GO:0006355
	Lele21g0460	139	CDD	AP2	16	75	IPR001471	GO:0003700\|GO:0006355
	Lele21g0460	139	ProSiteProfiles	AP2/ERF domain profile.	16	74	IPR001471	GO:0003700\|GO:0006355
	Lele21g0460	139	Coils	Coil	120	139	-	-
	Lele21g0460	139	Pfam	AP2 domain	16	67	IPR001471	GO:0003700\|GO:0006355
	Lele21g0460	139	PANTHER	DNA-BINDING DOMAIN	9	128	IPR044808	GO:0003700\|GO:0009873
	Lele21g0460	139	PRINTS	Ethylene responsive element binding protein signature	40	56	IPR001471	GO:0003700\|GO:0006355
	Lele21g0460	139	PRINTS	Ethylene responsive element binding protein signature	17	28	IPR001471	GO:0003700\|GO:0006355
	Lele21g0460	139	FunFam	Ethylene-responsive transcription factor 2	16	75	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g0460	Lele-ChrLele21	2964767	2965186	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g0460	15	134	AP2-EREBP Transcription Factor Family	AT3G23230	64.800	7.15e-48	149

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele21g0460		AP2	1.2e-16	CL0081