Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele21g0437 | ATGGAAGCCGAAGATGGAATGGCAGATCTTGCTAGCAATGTAAATATTGAGCAAGCCCTTATTGCTTTGAAAAAAGGCACACAGTTAATTAAGTATAGTCGGAAAGGAAAGCCAAAACTTTGTCCATTCAGACTCTCAACGGATGAAAAAACATTGATTTGGATAAGTCACAGAGGGGAAAGACATCTGAATTTGTCCGGTGTTTCACATATTATCTCTGGACAGAGAACGGCTGTCTTTAAAAGATATTTGTGTCCTGAAAAGGATTCTCTGTCATTTTCTCTTCTTTACAGGAACAATGAACGGTCACTGAATCTGATTTGTAAGGATAAAGCTGAAGCAGATGTATGGATTACAGTCCTCAAAGCATTAATATCTCCTGGACAACGTCTCAGGCATAGGCATACCACAAGTGACTTTTCGAGTCTGCAAGGGAGCGTTGACTTTACTCATGATGTTCATACTTGTAATGCAACGGTAGAGTATCCTTTAAGCAGTCTTCATGGTCGAGTTTCCATTGATTTGGCTTCTCGTGACACTTTATTGAATTGGGCAAACTCAGATGTGGGGTTAGAACGTGTAAATATGCAAATGAGGGTTGGAGCTGGAGACAATTTCCGTCTTAGTGTGTCAAGTGCAGCATCTGGAATAGATGACATTGAATCGCTTGGAGACGTTTTTGTATGGGGAGAGGTTTGGGCAGATGGGGTTTCATCTGATGTATTGGGGAATCAAGTCCCTGTGAAGACAGATGTATTGATTCCCAAGTCATTAGAGTCAAATGTTGTTCTTGATGTTCAACAGATTGCATCTGGTGTCCGCCATACTGCTCTAGTTACAAGGCAAGGAGAGCTTTTCACTTGGGGAGAAGAATGTGGAGGAAGACTTGGTCATGGGATTGATAGAGACTTTAGCCGCCCTCGTCTAGTTGAATTCCTGGCAGTGAATAACGTGGAATTTGTGGCATGTGGAGAGTATCATACATGTGCCTTATCTACATCCGGTGATTTATTCTCTTGGGGTGATGGTGCCCACCATGCTGGACTTCTTGGTCATGGAACGGACATTAACCACTGGATACCAAAGAGAATCGTAGGCCCTTTAGAAGGACTTCAAGTTTTATCTGTTGCATGCGGCACATGGCATTCGGCGTTGGCAACATCCAATGGGAAATTGTTTACCTTTGGGGATGGAGCATTTGGTGTCTTGGGCCATGGAGATATAGTGAGTGTGCCATACCCAAAGGAGGTGCAATCATTGAGTGGACTAAAGACCATTAAGGTTGCATGTGGAGTATGGCACACCGCAGCTATTGTAGAGGTTATGGGACAAAGCGGTTCAAATGTCTCATCTAGAAAGCTCTTTACTTGGGGTGATGGTGACAAATATCGTTTGGGTCATGGCAACAAGGAAACTTACCTCCAACCCACCTGTGTCTCTGCACTTATTGAATACAATTTCCAACAGGTGACATGTGGACACACTTTGACAGTCGCCCTCACTACAACAGGTCAAGTCTTCACTATGGGAGGCACTGCAAATGGTCAACTGGGGAATCCTCTCTCTGATGGAAAAGTTCCTATCATGGTACAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATAGCATGTGGAGAACATCATGTTGCTGCCTTGACGTCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACTTGGAGACGTAGACGATAGGAAATCTCCAACGTTGGTTGAAGGCTTGAAAGATAGGCATGTAAAAAGTATCTCATGTGGCTCAAACTTCATGTCTTGTATTTGCATCCACAAATGGGTATCTGGAGTAGACCAATCTGTTTGCTCCGGTTGCCGGCAAGCATTTGGTTTTACTAGAAAAAGGCACAATTGTTATCATTGTGGATTGGTGCATTGTCATTCTTGTAGCTCTAAGAAGGCATTGAAAGCAGCATTAGCTCCAACGCCTGGAAAACCACATCGTGTCTGTGATGCATGCCATGCAAAACTTAAAAATACTGAGATTGGCCATGCTTCCACTTTTAGCAGAAGAATTACCCCTCCACGTAGATCAATAGATAATAGAGAAAGAATAGAATGGATAGAGCCAAAGTCTTCAAGAGTTCTCTTATCTCCCATCACAGAACCTGTAAAATACCTTGAGATAAGGACTAACAAGCCAGGACTTAGATCTGATTCATCTTCCATAGTTCGAGCTTCTCAAGTTCCATCACGTTTACAGTTAAAAGATATTGCCTTTCCAAGTTCACTGAGCACCATTCAGCATGCTTTAAAGCCTGTTGTTAGACCACCTAGTCCACCACGAACCCCACCTGCCAATTCTAGATCTTCATCGCCATATCCAAGAAGACCCAGCTCACCACATTCATCACCCGCTCCTGGATTTTCTAAAAGTATTATAGATAGTTTGAGGAAGACTAATGAGATTTTGAATCAAGAAGTCTTGAAATTGCATAAACAAATTCGAAGTTTGAAGCAGAAGAATGAAACACAAGATAAGGAGATACAGAAGCTTCAGAAAAATGTTGAGGAAGCCACCTCTATGACTCGGGAGAAATCTTCCAAGAGTCATGTAGCAAATGAATTTATTAAGTCCATAAAAGATCAGTTGAAGGAAATGGCTAACAAGCTGGCACCAGAGGTTTCTGACTGTAACAGCTTGAAAATCATGCACGACCAAGCAGAAGATTTTCTAAGAAAAATTGCAGAATCTCAAACTTCTTCCTCTTTACCATCAAACTTAGAGTCTGATCAACTAAATGCAACTACTGATATAACTGCTTCAGATGGCGACACTGCTAAACCACAAGAACAAAAACTGGAGGACAGTGAAGATGCTGCAGGAATTGATTCATCTCAAGATGGTGGAAAAGTTCAAGATGGTAATGGATCCTCTATTTCTACTAGAGGAGAAGCAGGGCCCCTACAAAGCTCAGATCATGGCTCAGGCTCACCGAACTCTTCAAGACCTAGGAAAGAAGGAGAAACAGAAACCATTGAACAATTTGCACCCGGTGTGTATGTGACACTCATAGTGCGTCCCGGTGGTTATAAAATTTTTAAACGAGTTAGATTCAGTAAGCGAAGGTTCGATGAACAACAGGCAGAAGAATGGTGGAGCAAAAACAAAGATAAGGTGCTTAGGAAATATAATCCATCAGCAACAAATTTTGCAGCTACAGGGCCACCTAGCACCCGCCCTTCGCCTCCTGTTGAAGAGAACGTTGAGTCTTCACATTCCTAA | 3273 | 0.4241 | MEAEDGMADLASNVNIEQALIALKKGTQLIKYSRKGKPKLCPFRLSTDEKTLIWISHRGERHLNLSGVSHIISGQRTAVFKRYLCPEKDSLSFSLLYRNNERSLNLICKDKAEADVWITVLKALISPGQRLRHRHTTSDFSSLQGSVDFTHDVHTCNATVEYPLSSLHGRVSIDLASRDTLLNWANSDVGLERVNMQMRVGAGDNFRLSVSSAASGIDDIESLGDVFVWGEVWADGVSSDVLGNQVPVKTDVLIPKSLESNVVLDVQQIASGVRHTALVTRQGELFTWGEECGGRLGHGIDRDFSRPRLVEFLAVNNVEFVACGEYHTCALSTSGDLFSWGDGAHHAGLLGHGTDINHWIPKRIVGPLEGLQVLSVACGTWHSALATSNGKLFTFGDGAFGVLGHGDIVSVPYPKEVQSLSGLKTIKVACGVWHTAAIVEVMGQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFQQVTCGHTLTVALTTTGQVFTMGGTANGQLGNPLSDGKVPIMVQDKLVGEFVEEIACGEHHVAALTSRSELYTWGKGANGRLGLGDVDDRKSPTLVEGLKDRHVKSISCGSNFMSCICIHKWVSGVDQSVCSGCRQAFGFTRKRHNCYHCGLVHCHSCSSKKALKAALAPTPGKPHRVCDACHAKLKNTEIGHASTFSRRITPPRRSIDNRERIEWIEPKSSRVLLSPITEPVKYLEIRTNKPGLRSDSSSIVRASQVPSRLQLKDIAFPSSLSTIQHALKPVVRPPSPPRTPPANSRSSSPYPRRPSSPHSSPAPGFSKSIIDSLRKTNEILNQEVLKLHKQIRSLKQKNETQDKEIQKLQKNVEEATSMTREKSSKSHVANEFIKSIKDQLKEMANKLAPEVSDCNSLKIMHDQAEDFLRKIAESQTSSSLPSNLESDQLNATTDITASDGDTAKPQEQKLEDSEDAAGIDSSQDGGKVQDGNGSSISTRGEAGPLQSSDHGSGSPNSSRPRKEGETETIEQFAPGVYVTLIVRPGGYKIFKRVRFSKRRFDEQQAEEWWSKNKDKVLRKYNPSATNFAATGPPSTRPSPPVEENVESSHS | 1090 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele21g0437 | 1090 | Gene3D | - | 12 | 135 | IPR011993 | - | |
| Lele21g0437 | 1090 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 60 | 882 | - | - | |
| Lele21g0437 | 1090 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 621 | 679 | IPR013083 | - | |
| Lele21g0437 | 1090 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 283 | 334 | IPR000408 | - | |
| Lele21g0437 | 1090 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 504 | 555 | IPR000408 | - | |
| Lele21g0437 | 1090 | MobiDBLite | consensus disorder prediction | 965 | 999 | - | - | |
| Lele21g0437 | 1090 | Pfam | Pleckstrin homology domain | 17 | 125 | IPR001849 | - | |
| Lele21g0437 | 1090 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 390 | 441 | IPR000408 | - | |
| Lele21g0437 | 1090 | MobiDBLite | consensus disorder prediction | 935 | 1015 | - | - | |
| Lele21g0437 | 1090 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 452 | 503 | IPR000408 | - | |
| Lele21g0437 | 1090 | Pfam | FYVE zinc finger | 608 | 674 | IPR000306 | GO:0046872 | |
| Lele21g0437 | 1090 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 335 | 389 | IPR000408 | - | |
| Lele21g0437 | 1090 | MobiDBLite | consensus disorder prediction | 1061 | 1090 | - | - | |
| Lele21g0437 | 1090 | CDD | FYVE_like_SF | 618 | 670 | - | - | |
| Lele21g0437 | 1090 | SUPERFAMILY | PH domain-like | 16 | 125 | - | - | |
| Lele21g0437 | 1090 | MobiDBLite | consensus disorder prediction | 770 | 784 | - | - | |
| Lele21g0437 | 1090 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 224 | 282 | IPR000408 | - | |
| Lele21g0437 | 1090 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 283 | 331 | IPR000408 | - | |
| Lele21g0437 | 1090 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 454 | 500 | IPR000408 | - | |
| Lele21g0437 | 1090 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 334 | 385 | IPR000408 | - | |
| Lele21g0437 | 1090 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 504 | 552 | IPR000408 | - | |
| Lele21g0437 | 1090 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 389 | 438 | IPR000408 | - | |
| Lele21g0437 | 1090 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 557 | 603 | IPR000408 | - | |
| Lele21g0437 | 1090 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 201 | 443 | - | - | |
| Lele21g0437 | 1090 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 428 | 438 | IPR000408 | - | |
| Lele21g0437 | 1090 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 556 | 607 | IPR000408 | - | |
| Lele21g0437 | 1090 | CDD | PH_PLC_plant-like | 16 | 126 | - | - | |
| Lele21g0437 | 1090 | Pfam | Transcription factor BRX N-terminal domain | 861 | 895 | IPR027988 | - | |
| Lele21g0437 | 1090 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 612 | 674 | IPR017455 | - | |
| Lele21g0437 | 1090 | SUPERFAMILY | FYVE/PHD zinc finger | 608 | 675 | IPR011011 | - | |
| Lele21g0437 | 1090 | Gene3D | - | 177 | 449 | IPR009091 | - | |
| Lele21g0437 | 1090 | Gene3D | - | 450 | 620 | IPR009091 | - | |
| Lele21g0437 | 1090 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1005 | 1060 | IPR013591 | - | |
| Lele21g0437 | 1090 | MobiDBLite | consensus disorder prediction | 785 | 808 | - | - | |
| Lele21g0437 | 1090 | SUPERFAMILY | RCC1/BLIP-II | 223 | 609 | IPR009091 | - | |
| Lele21g0437 | 1090 | SMART | fyve_4 | 606 | 675 | IPR000306 | GO:0046872 | |
| Lele21g0437 | 1090 | PRINTS | Chromosome condensation regulator RCC1 signature | 335 | 351 | IPR000408 | - | |
| Lele21g0437 | 1090 | PRINTS | Chromosome condensation regulator RCC1 signature | 266 | 279 | IPR000408 | - | |
| Lele21g0437 | 1090 | PRINTS | Chromosome condensation regulator RCC1 signature | 493 | 511 | IPR000408 | - | |
| Lele21g0437 | 1090 | PRINTS | Chromosome condensation regulator RCC1 signature | 285 | 301 | IPR000408 | - | |
| Lele21g0437 | 1090 | PRINTS | Chromosome condensation regulator RCC1 signature | 392 | 406 | IPR000408 | - | |
| Lele21g0437 | 1090 | PRINTS | Chromosome condensation regulator RCC1 signature | 376 | 392 | IPR000408 | - | |
| Lele21g0437 | 1090 | PRINTS | Chromosome condensation regulator RCC1 signature | 551 | 572 | IPR000408 | - | |
| Lele21g0437 | 1090 | Coils | Coil | 810 | 865 | - | - | |
| Lele21g0437 | 1090 | MobiDBLite | consensus disorder prediction | 767 | 808 | - | - | |
| Lele21g0437 | 1090 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 269 | 279 | IPR000408 | - | |
| Lele21g0437 | 1090 | ProSiteProfiles | BRX domain profile. | 1006 | 1061 | IPR013591 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele21g0437 | Lele-ChrLele21 | 2821752 | 2827385 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele21g0437 | 1003 | 1074 | Major Intrinsic Protein MIP | AT1G31880 | 38.889 | 6.78e-10 | 60.5 |