Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0404 ATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATATCCTGGGATACCACGGAGGACAAACTGAAAGACCATTTCAGCAACTACGGTGATGTTCTGCACACCTCCGTTATGAGAGAGAAGAACACTGGGAAACCCAGAGGCTTTGGATTCGTTGTGTTCGCAGATCCTTCGATTCTCGATAGGGTTCTCGAAGAGAAACACGAAATCGATGGCAGAACGGTAGATGCCAAGAAGGCCTTCTCCAGAGAGGATCAACAAATTTCTGCTCCTTCCAGAGCTGGAAATCCCAACTCTTATAGAAATTCTGGAAATGGAGGAAATATCAGGACCAAAAAAATATTTGTTGGAGGGTTGCCTCCTACATTGACTGAAGAAAAGTTTCGTCAGTATTTTGAGGCTTATGGTCATGTTAGTGATGTAGTACTCATGTATGACCAGAATACTGGACGGCCACGTGGATTTGGGTTTATTTCATTTGATTCTGAAGATGCAGTTGACAGGGTTTTGCATAAGCCATTTCACGATTTAAATGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAGGATGCTAATCCGGGTGCAAGTGGCCGTATGGGTGGTGCGGGAGGCGGTGGTTATCAGGGTTACGGGGCATCTGGTGGCAGCCAAAATGCATATGATGGTCGGATGGATTCTGGTAGGTATGTGCAGGCTCCAAGTGCTGGGGGTGGATTTCCACCTTATGGTTCTTCTGGATATAGTGCTGCTGGGTACGGTTATGGTCCTGCTAATAATGGCATGGGTTATGCTGGATATGGAAGTTATGGTGGTGCAGGCACTGGGTTTGGTGGACCTGCTGGTGCAACCTATGGGAATCCTAACATCCCTAATGCTGCTTATGCTGGTGGTCCGCCTGGTGCCCCAAGGAGTTCATGGCCTGCACAAGCTCCCTCAGGTTATGGTTCTATGGGCTATGGGAATACTGCTGCTTGGGGTGTTCCAGGTGGTGGTGGTGGATCTGGCAGCAGCGGTGGGCCTGGTTCAGCACCTGCAGGTCAATCACCCAGTGGAGCTGCTGGATATGGAAATCAAGGGTATGGATATGGTTACGGTGGGTATGGTGGAAGTGATAGTTCTTTTGGGAACCCTAGTGCATATGGTGTTGTTGGTGGACGGTCTAGTAGTGCCCCAAACAGTTATGCTGGTGGTCCAGGAGGAAATGAATCACAAGGGAGTGGTGGCAACTACAATGGAAGTGGCTATGGTGATGCAAATGGAAATTCAGGATATGGAAATGCTGCATGGAGATCTGATCCTTCGCAACCATCTGGAAATTATGGGACTCCTCAGGCAAATGGTCCTCATGGTGGGCAAGTTGGTTATGGCAGCAGCTATGGTGGTGCACCGTCACGACAGGTCCAGCAGCAGTAA 1416 0.488 MDSDQGKLFIGGISWDTTEDKLKDHFSNYGDVLHTSVMREKNTGKPRGFGFVVFADPSILDRVLEEKHEIDGRTVDAKKAFSREDQQISAPSRAGNPNSYRNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFEAYGHVSDVVLMYDQNTGRPRGFGFISFDSEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRMGGAGGGGYQGYGASGGSQNAYDGRMDSGRYVQAPSAGGGFPPYGSSGYSAAGYGYGPANNGMGYAGYGSYGGAGTGFGGPAGATYGNPNIPNAAYAGGPPGAPRSSWPAQAPSGYGSMGYGNTAAWGVPGGGGGSGSSGGPGSAPAGQSPSGAAGYGNQGYGYGYGGYGGSDSSFGNPSAYGVVGGRSSSAPNSYAGGPGGNESQGSGGNYNGSGYGDANGNSGYGNAAWRSDPSQPSGNYGTPQANGPHGGQVGYGSSYGGAPSRQVQQQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0404 471 MobiDBLite consensus disorder prediction 76 107 - -
Lele21g0404 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lele21g0404 471 MobiDBLite consensus disorder prediction 85 107 - -
Lele21g0404 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lele21g0404 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Lele21g0404 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Lele21g0404 471 MobiDBLite consensus disorder prediction 376 447 - -
Lele21g0404 471 Gene3D - 4 88 IPR012677 -
Lele21g0404 471 MobiDBLite consensus disorder prediction 376 471 - -
Lele21g0404 471 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lele21g0404 471 Gene3D - 107 230 IPR012677 -
Lele21g0404 471 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lele21g0404 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele21g0404 471 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 471 - -
Lele21g0404 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lele21g0404 471 SUPERFAMILY RNA-binding domain, RBD 111 217 IPR035979 GO:0003676
Lele21g0404 471 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Lele21g0404 471 MobiDBLite consensus disorder prediction 331 351 - -
Lele21g0404 471 FunFam heterogeneous nuclear ribonucleoprotein 1 107 224 - -
Lele21g0404 471 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0404 Lele-ChrLele21 2599734 2602000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0404 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.558 1.09e-08 55.8