Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0388 ATGGCAGCTTCTGCATCTGCGGCTATAGGCTCCTCATTCTCTTCCTCCATCAACACTCTCAAGTGCCTTCGTTCGTCCAAGAACTTGTCCACTGAACCCCCTCTCCTCAGAATTTCACCAAACCGCGTGTTGGTTTCTGGGTCACTATCGCACTTGGTGGAACCACTTTCTTCTGATACCAATGTCAACAAGTTCTGGGTTTCAAGGGTTTCGGCACAAGAAGAGCTTGTAGTGTTCGATGAGATTGATGCTGGTTTAGTTGAAGAAAATGAAGAGGGAGAAAAGGAAGTGGTGGAAGAAAAAGGAGAGGCTGAAGAAGTCTCTGTAAACACTAAACTTTATTTTGGGAACTTGCCTTACAGTGTTGATAGTGCACAACTTGCAGCGATTATTCAGGATTACGGCAGCCCAGAACTCATTGAGGTTCTTTATCACAGGGAGACTGGAAAAAGCAGAGGTTTTGCATTTGTTACAATGAGTAGTATCGAGGATTGCAATGCAGTGATAGAAAACCTTGAAGGAACTGAATATTTGGGTCGAACCCTGCGAGTGAACTTCTCTGACAAACCTAAACCGAAAGAACCATTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACTTGTCATGGTCTGTAACTTCTGAGAGTCTGACAGAAGCTTTTCAAGAATATGGACATGTGGTTGGAGCTAGGGTGTTATATGATGGGGAAACAGGAAGATCCCGCGGTTATGGCTTTGTTTGCTATTCAACCAAATCAGAAATGGAAACTGCCCTTTCATCCATGAATGGAGTGGAACTTGAAGGACGGGCAATGCGTGTAAGCTTGGCTGAAGGGAAACGATCATAA 852 0.4425 MAASASAAIGSSFSSSINTLKCLRSSKNLSTEPPLLRISPNRVLVSGSLSHLVEPLSSDTNVNKFWVSRVSAQEELVVFDEIDAGLVEENEEGEKEVVEEKGEAEEVSVNTKLYFGNLPYSVDSAQLAAIIQDYGSPELIEVLYHRETGKSRGFAFVTMSSIEDCNAVIENLEGTEYLGRTLRVNFSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLTEAFQEYGHVVGARVLYDGETGRSRGYGFVCYSTKSEMETALSSMNGVELEGRAMRVSLAEGKRS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0388 283 Gene3D - 193 283 IPR012677 -
Lele21g0388 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Lele21g0388 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 273 IPR000504 GO:0003723
Lele21g0388 283 SMART rrm1_1 203 276 IPR000504 GO:0003723
Lele21g0388 283 SMART rrm1_1 112 185 IPR000504 GO:0003723
Lele21g0388 283 Gene3D - 72 192 IPR012677 -
Lele21g0388 283 SUPERFAMILY RNA-binding domain, RBD 107 195 IPR035979 GO:0003676
Lele21g0388 283 SUPERFAMILY RNA-binding domain, RBD 195 282 IPR035979 GO:0003676
Lele21g0388 283 FunFam 31 kDa ribonucleoprotein, chloroplastic 72 192 - -
Lele21g0388 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Lele21g0388 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Lele21g0388 283 PANTHER OS02G0815200 PROTEIN 38 281 - -
Lele21g0388 283 FunFam 28 kDa ribonucleoprotein, chloroplastic 193 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0388 Lele-ChrLele21 2514717 2516831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0388 111 281 Eukaryotic Initiation Factors Gene Family AT3G16380 31.720 7.02e-18 81.6