Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0375 ATGGATTCTCTTGTACCATTTCAAGACCTCAATGACTTGCCCGACCCATCCGCCTGTATGCCCAGCGGCAGCACCAACCCCATCAATGTTGGTGCCGGTGCGACCACCCCCACCATTCTCTTGGTCCCGAAACTGGAACCGAAGCTCGAGCCGTTGGACGAGCCGTGTCTGAACCATCGTCCCCAAGAACACCAAGAAGTGGAGCAGACTATGTTTTCGAATCATGCCTTGGACGGGCTCTCTCCGTCACAGCGCAATAATTTCTGTTATAATAGTCTGGTTTCCGTTGACACCCGAGGCGCATCGATGGAACAAGACAACTTGTATTCGGAGTTCTACCGATTTTCTGAGCATTTTAGGACTATGTTAGCCGAGAGGTTAAACGCAAAGGGAGATGTCAACGTTTTAGGTTCAGATTCGAGGGCAATTGTTCCTGTGCCAGAGGAAAACCAGATTCCTCCGGCCGTCGTTACTCCGCGGCGGAGCCCGCGGGTGAAGGAGCTGGTAAGGGTCAGTGATCTTCGAATTGAAGATGACAGGTATTTCCGTGACATCACTAGAAGGACCAGGATGATTTATGATTCGTTGCGTGTTTTGGCAACGGTGGAGGATGAGAAGAAATTCGATCTTGCTAGCGCTAAACGGATGCGAGGTGATTTGAGGGCTGCCTCGTTGATGAGGGATCGTGGATTGTGGCTTAATCGTGATAAGCGGATAGTGGGTGCGATTCCAGGTATTTACATTGGCGATTTGTTCTTTTTTAGGATGGAACTCGTCGTGGTTGGATTGCACGGTCAACCACAAGCTGGAATAGACTATCTTCCTTCTAGCCAGAGCACAAATGGGGAGCCGATAGCAACCAGTGTGATAGTTTCTGGTGGATATGAGGACGACGAAGACAGTGGCGATGTGATAATCTACACGGGTCATGGAGGCCAAGATAAGAATCATTCCAGGCAGGTTGTTCACCAGAAGTTAGAAGGAGGAAATCGTGCTATGGAAAGAAGCATGTATTATGGGATTGAAGTGCGCGTTATTCGAGGGTTCAAATATGAGGGGAGTGTTTCTAGTAAAATTTACATTTATGATGGCTTGTATAGAATTGTTCAATGCTGGTTTGATGTGGGTAAATCTGGATTTGGAGTTTACAAGTATAAACTTGTCAGAATTCAGGGCCAGCCTGAAATGGGTAGTGCTATTCTTAGACTTGCTCAGACTCTTAGGAATCGTCCACTGTCTATCAATCCAATGGCTTATCTCAGTCTTGATATTTCTAACCAAAAGGAGAAGGTTCCTGTTCGTCTTTTTAATGACATAGATAGGGATCACGAGCCTCTTCGTTATGAATATCTTTCACGGACTAATTTTCCACCATTTGTATTTCATCAAAGTGGGAATGCTACTGGTTGTGACTGCGTTGACGGTTGCGCTGATAACTGCTTTTGTGCTATGAAAAATGGCGGCCAATTCCCTTATAATCTAAATGGGATTCTTGTGAGAGGGAAGCCTATAATTTTTGAATGTGGTCCTTTCTGTCGTTGTCCTCCAAATTGCAGAAATCGGGTTACACAACATGGGCCGAAAAATAGATTGGAAGTGTTCAGGTCAAGGGAAACAGGTTGGGGAGTGAGGTCATTGGACCTTATTCATGCTGGTGCTTTTATCTGTGAATATGCTGGGGTTGTTCTGACTATGGAGCAAGCACAAATTTTTTCGATGAATGGTGATTCATTGATATATCCTAGTCGGTTTTCTAATAGGCAAGCCTCAGAATGGGGTGATTTATCTCAAATTTACTCTGATTATGTGCGTCCATCTTATCCATCAATTCCCCCTTTAGATTTTGCGATGGATGTGTCCACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCAATTCCTAATGCGTCGGTTCAGTTTGTGCTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCATTGGAGAACATCCCTCCAATGAGGGAGCTCAGCCTTGATTATGGAGTGGCTGATGAATGGACAGGAAAGCTTTCTATATGTAACTGA 2061 0.4508 MDSLVPFQDLNDLPDPSACMPSGSTNPINVGAGATTPTILLVPKLEPKLEPLDEPCLNHRPQEHQEVEQTMFSNHALDGLSPSQRNNFCYNSLVSVDTRGASMEQDNLYSEFYRFSEHFRTMLAERLNAKGDVNVLGSDSRAIVPVPEENQIPPAVVTPRRSPRVKELVRVSDLRIEDDRYFRDITRRTRMIYDSLRVLATVEDEKKFDLASAKRMRGDLRAASLMRDRGLWLNRDKRIVGAIPGIYIGDLFFFRMELVVVGLHGQPQAGIDYLPSSQSTNGEPIATSVIVSGGYEDDEDSGDVIIYTGHGGQDKNHSRQVVHQKLEGGNRAMERSMYYGIEVRVIRGFKYEGSVSSKIYIYDGLYRIVQCWFDVGKSGFGVYKYKLVRIQGQPEMGSAILRLAQTLRNRPLSINPMAYLSLDISNQKEKVPVRLFNDIDRDHEPLRYEYLSRTNFPPFVFHQSGNATGCDCVDGCADNCFCAMKNGGQFPYNLNGILVRGKPIIFECGPFCRCPPNCRNRVTQHGPKNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPSRFSNRQASEWGDLSQIYSDYVRPSYPSIPPLDFAMDVSTMRNVACYMSHSSIPNASVQFVLYDHNNLMFPHLMLFALENIPPMRELSLDYGVADEWTGKLSICN 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0375 686 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 223 405 - -
Lele21g0375 686 Gene3D SET domain 398 686 IPR046341 -
Lele21g0375 686 Pfam Pre-SET motif 424 521 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele21g0375 686 ProSiteProfiles Pre-SET domain profile. 468 526 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele21g0375 686 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 149 674 - -
Lele21g0375 686 Gene3D - 238 397 IPR036987 -
Lele21g0375 686 ProSiteProfiles SET domain profile. 529 673 IPR001214 GO:0005515
Lele21g0375 686 ProSiteProfiles YDG domain profile. 241 389 IPR003105 -
Lele21g0375 686 Pfam SET domain 540 673 IPR001214 GO:0005515
Lele21g0375 686 SMART preset_2 421 513 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele21g0375 686 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 98 686 IPR025794 GO:0016571
Lele21g0375 686 SUPERFAMILY SET domain 412 685 IPR046341 -
Lele21g0375 686 Pfam SAD/SRA domain 240 393 IPR003105 -
Lele21g0375 686 SUPERFAMILY PUA domain-like 222 402 IPR015947 -
Lele21g0375 686 SMART G9a_1 236 393 IPR003105 -
Lele21g0375 686 MobiDBLite consensus disorder prediction 1 26 - -
Lele21g0375 686 SMART set_7 529 679 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0375 Lele-ChrLele21 2453432 2455492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0375 160 675 Su(var)3-9 homologs AT5G04940 40.038 4.04e-109 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele21g0375 SAD_SRA 2.1e-48 CL0178