Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0334 ATGTTGGAAGCCGCTCGGCGAGTCCACTCTTCTCTATTCCTCCTTCTTTCCTCAGCCTTTTCCTCCGCTAATTGTCTCTCCCTTTCGCTTTTCCATCTTTTGCTCTTTTTCCTACTCGCCTTCCACATTCCCAGAAGTAGGATTGGCTCAGAGAAGGCGAAGCTCGGAGTGAGAGGAGCGGCAATGGCAGAGACTTGGAAATATCTCAATGTCTGCTTGCTGGTGCTAGTAACGCTGTTCATTGGAGCCACCGCTAGAGTACAGATCTCTGAACTCAGGAATGTTGGAGCACAGAAATTGGAGAACTTAACCAACATGTCAATGGCAGCCAGAGCTAAACAGGCTGAGGAATTGATTGACCGTGCTGTGGCTGCTGAACCAGAGGAGGTTGTTTCCCAGACAGTAATGACCATTCGGAACAGCACGGAAAGAAGAAAGTTGGGATTTTTCTCCTGTGGAACCGGTAACCCCATTGATGATTGCTGGCGTTGCGACCCCAACTGGCAACGTAACAGAAAGCGCCTTGCAGACTGCGGCATTGGATTTGGTAGGAACGCCATTGGTGGTCGCGACGGTCGCTTCTATGTGGTCACTGACTCAGGAGACGATGACCCAGTCAACCCAAAGCCCGGCACTCTGCGCCACGCAGTGATCCAGGACAGTCCGCTGTGGATCGTATTCAAGCGTGACATGGTGATACAATTGAAGCAGGAGCTCATCGTGAACAGCTTCAAGACGATTGACGGGCGAGGAGCAAATGTGCACATTGCCAATGGAGGCTGCATCACCATCCAGTATGTTACAAATGTTATAATCCACGGTCTTCACATCCATGATTGCAAGCCCACAGGCAATGCCATGGTGAGAAGCTCCCCAACACACTATGGTTGGAGGACAATGGCGGACGGTGACGCCGTTTCCATATTTGGATCGAGTCACATTTGGGTCGACCACAATTCCCTCTCTCATTGCGCTGATGGCCTCGTCGACGCTGTCATGGGCTCTACTGCCATTACGATCTCCAACAACCACTTCACCCACCACAATGAGGTCATTCTGCTGGGCCACAGTGACTCTTACACAAGGGACAAGCAAATGCAAGTGACCATCGCTTACAACCATTTTGGAGAGGGACTCATCCAGAGGATGCCTAGGTGCAGGCACGGATATTTCCACGTAGTGAACAATGACTACACTCACTGGGAGATGTACGCCATTGGTGGGAGTGCAAACCCCACCATCAACAGCCAGGGGAACAGATACAATGCTCCGCTTAATCCCTTCGCCAAGGAGGTGACGAAGCGAGTGGAGACAGAGGCAAGCCAGTGGAAGGGATGGAATTGGAGGTCGGAGGGAGATCTGTTGCTGAACGGTGCTTATTTCACCCCATCTGGCGCCGGAGCCTCAGCCAGCTATGCCAGAGCCTCTAGCTTAGGAGCTAAGTCCTCTTCCATGGTCGGCACCATGACTTCTAATGCTGGCCCACTCGGTTGCAAAAGAGGCCGCCAGTGCTAG 1515 0.5215 MLEAARRVHSSLFLLLSSAFSSANCLSLSLFHLLLFFLLAFHIPRSRIGSEKAKLGVRGAAMAETWKYLNVCLLVLVTLFIGATARVQISELRNVGAQKLENLTNMSMAARAKQAEELIDRAVAAEPEEVVSQTVMTIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDSPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNPFAKEVTKRVETEASQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGTMTSNAGPLGCKRGRQC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0334 504 SMART amb_all 230 427 IPR002022 -
Lele21g0334 504 PANTHER PECTATE LYASE 18-RELATED 120 502 IPR045032 GO:0030570
Lele21g0334 504 SUPERFAMILY Pectin lyase-like 137 498 IPR011050 -
Lele21g0334 504 Gene3D - 155 497 IPR012334 -
Lele21g0334 504 PRINTS Pollen allergen Amb family signature 302 323 IPR018082 -
Lele21g0334 504 PRINTS Pollen allergen Amb family signature 475 498 IPR018082 -
Lele21g0334 504 PRINTS Pollen allergen Amb family signature 446 470 IPR018082 -
Lele21g0334 504 PRINTS Pollen allergen Amb family signature 404 423 IPR018082 -
Lele21g0334 504 PRINTS Pollen allergen Amb family signature 178 195 IPR018082 -
Lele21g0334 504 PRINTS Pollen allergen Amb family signature 202 227 IPR018082 -
Lele21g0334 504 PRINTS Pollen allergen Amb family signature 238 254 IPR018082 -
Lele21g0334 504 PRINTS Pollen allergen Amb family signature 382 401 IPR018082 -
Lele21g0334 504 FunFam Pectate lyase 155 497 - -
Lele21g0334 504 Pfam Pectate lyase 236 419 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0334 Lele-ChrLele21 2202385 2206496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0334 88 504 Polysaccharide Lyase AT4G13710 78.910 0.0 712