Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0275 ATGCTGGAATCCTCTTATCATATTGATTCTCTCGATAAACAGTTCTTTAAATGTTTTTACAATAAAAAAACATTAAAATTTCACTTGGCAAGGCCTCGAGACTTTCTATCAAGAATCATCATTATGTGTTGTGTTCAATCAAATAATTCCCCGACTAAGTGGTCAAGATGCAACACCGTGGTGACATTTGGTACTGCTATTCCAGCTGGTCAGTTTGTTGCTGGAATCATGATAGGATCAACATATGGACGTCTAGTTGGTATGCTTGTTGTACGACATTACAGAAAGCTAAACATTGAAGAGGGAACGTATGCTCTGCTGGGAGCTGCATCTTTTCTTGGAGGTTCAATGTGGATGACAGTGTCTGCTGTCGGTGATGCTTTTGATGAGGGTCTCTATGAAGAGCAGGCACGACTGAGGGGTATTCCATTACTGGAACCGAGGCCCAAATATGTGATGCGGAATATGACAGCAAGGGAGGCCTGTGGGAGTGTAATGGTGCTCTCCTTCCCCCGTGTTGTTAAGGTTGCAGATGTAGTTTCTATTCTTCGGAGCAAGAAACACAATTGTTTTCCTGTGATTGATCACACAAATGGAAAACCACTTGTTATTGGATTAGTACTTCGAAGTCATTTGTTGGTAATTCTGCAATCAAAGGTTGATTTCCAGCATAGTCCTTTACCGTCTGATCCCAGAGGTGGAGCGAAGCCAATGAGGCATGACTTTGGTGAATTTGCGAAGCCTGTTTCTAGTAAGGGAATATCGATAGATATACTTTTAAGTTCAGATGACTTGGAAATGTACATAGATCTTGCCCCTTTTTTGAATCCGTCACCATATATTGTACCTGAAGATATGTCGTTGAAAAAGGTTTACAATCCTTTCCACCAACTAGGGTTGAGACATCTATTTGTTGTTCCACGTCCGTCTCATGTGCTTGGCTTGATAACCAGAAAAGACTTGTTGATTGAGGACACTGAAAATGTGAATACGGTAGAGCTCCAGTCAACTAGAGTAAGGGTCTTGTTATTTTCTGTCAAGAATGGCGATAAAAGATTGATGACCAGGAATGCAGATGCTGAGCGGCCTTTGTTAAATGGCCTACTGGTTCAGGATCAAATTGGCTAA 1128 0.414 MLESSYHIDSLDKQFFKCFYNKKTLKFHLARPRDFLSRIIIMCCVQSNNSPTKWSRCNTVVTFGTAIPAGQFVAGIMIGSTYGRLVGMLVVRHYRKLNIEEGTYALLGAASFLGGSMWMTVSAVGDAFDEGLYEEQARLRGIPLLEPRPKYVMRNMTAREACGSVMVLSFPRVVKVADVVSILRSKKHNCFPVIDHTNGKPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGAKPMRHDFGEFAKPVSSKGISIDILLSSDDLEMYIDLAPFLNPSPYIVPEDMSLKKVYNPFHQLGLRHLFVVPRPSHVLGLITRKDLLIEDTENVNTVELQSTRVRVLLFSVKNGDKRLMTRNADAERPLLNGLLVQDQIG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0275 375 Gene3D Clc chloride channel 56 130 - -
Lele21g0275 375 SMART cbs_1 166 217 IPR000644 -
Lele21g0275 375 SMART cbs_1 278 326 IPR000644 -
Lele21g0275 375 CDD CBS_pair_voltage-gated_CLC_euk_bac 157 322 - -
Lele21g0275 375 ProSiteProfiles CBS domain profile. 275 332 IPR000644 -
Lele21g0275 375 Pfam Voltage gated chloride channel 59 124 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele21g0275 375 SUPERFAMILY Clc chloride channel 58 147 IPR014743 -
Lele21g0275 375 Pfam CBS domain 276 322 IPR000644 -
Lele21g0275 375 Pfam CBS domain 175 216 IPR000644 -
Lele21g0275 375 PRINTS Chloride channel signature 67 87 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele21g0275 375 PRINTS Chloride channel signature 102 118 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele21g0275 375 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 57 327 - -
Lele21g0275 375 Gene3D - 166 323 IPR046342 -
Lele21g0275 375 SUPERFAMILY CBS-domain pair 150 322 IPR046342 -
Lele21g0275 375 FunFam Chloride channel protein 267 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0275 Lele-ChrLele21 1821711 1826801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0275 59 340 Ion Channels AT5G26240 71.613 6.87e-143 422