Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0259 ATGGATGATTTCACCTCTTCCTCTTCTCTTCCTCGTCCTCCTCCACCTCTATCCGACATTCTCCCCACATCGGCTTCATCCACGTCTGAAGCTTTCGACGACGTTTCCGAGGACTCCTGCAGTATTTGTCTAGAGCCCTTCAGCACCGATGACCCTGCTACTATAACAAATTGCAAACATGAATATCATCTGCATTGTATTCTTGAATGGTCCCAGAGAAGCAAAGAGTGCCCAATCTGTTGGCAAATACTTGTCTTGAAAGACCCTGCCAACCAAGAACTTCTAGCTGCAGTGGAAGCTGAAAAACGCATAAGGTCAAGAAGCTCGTATTCATCTGCATTCCCATATCCTCGTATCCCCATTGAACAGCATAGTGCGGAACATGATGATTCTTGTTCATATGACTCTGATTTTGAGGAACAAATTATGCAGCACCTAGTTGCTACTGCAAGTAGAGCACATTATTTTCGTAGAAGGGAAATGCAAAGATCTTCTGGTGTGGGTCCATCTCGGATTCCTGTAGTTGACTCCTCATTGCATGTCTCTGGGCTGCAACCGGTGTATACAACTTCACCTTCTGGAGGTAGTTCACCTAATTCCTGTTCTGCTGCAGATGTTCAACCTCCACCGTCTGCCCCTTCCTCTGTTGAAGCGATTACAAGAAATTCCACTCCTGAAATTGATGACCCTTTCAAAGCCAGAGTTCTTTATAGCCAGCCACCATCTGAGAGTGCGAGAAGACTGAACACCTCTGAGATGTTTACCTTCCCCGAGTCCATCAAGACCAAATTTTCCGCTGCTTCAGCTAGATATAAAGAATCTATTTCAAAAAGTACACGTGACCTTAAAGAGAAGTTACTTGGTCATAATGCCTCAGTAAAAGAGTTGAGTAAAGGTGTTCAGCGGGAGATGAATGCTGGCATTGCTGGTGTTGCACGGATGATTGAACGCCTTGAACTTGCCTCAAAACGGGCTACTGCTTCTCCTCCTATGCCTAGCTCTACCGAGGGAACTTCTGGCTTCCCCTCTAAAGGAAAGACTGTGCAAGAAAATGGTAGTGGACAGTCTCTTCTCTCTGCTGTTAAGGAAGAGAGTGGGGTTGTGATTCATGATGTTAGATCAGGTCCACCTGCACAGGTTTCCAGCACGGCTGTCAGTCCAGTAGAATATCCTCATCCACATGTTCAGAGTGGACGTGATGCGGTAAAGACTTAG 1215 0.4601 MDDFTSSSSLPRPPPPLSDILPTSASSTSEAFDDVSEDSCSICLEPFSTDDPATITNCKHEYHLHCILEWSQRSKECPICWQILVLKDPANQELLAAVEAEKRIRSRSSYSSAFPYPRIPIEQHSAEHDDSCSYDSDFEEQIMQHLVATASRAHYFRRREMQRSSGVGPSRIPVVDSSLHVSGLQPVYTTSPSGGSSPNSCSAADVQPPPSAPSSVEAITRNSTPEIDDPFKARVLYSQPPSESARRLNTSEMFTFPESIKTKFSAASARYKESISKSTRDLKEKLLGHNASVKELSKGVQREMNAGIAGVARMIERLELASKRATASPPMPSSTEGTSGFPSKGKTVQENGSGQSLLSAVKEESGVVIHDVRSGPPAQVSSTAVSPVEYPHPHVQSGRDAVKT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0259 404 MobiDBLite consensus disorder prediction 327 359 - -
Lele21g0259 404 MobiDBLite consensus disorder prediction 324 359 - -
Lele21g0259 404 ProSiteProfiles Zinc finger RING-type profile. 40 80 IPR001841 -
Lele21g0259 404 CDD RING-H2 40 80 - -
Lele21g0259 404 MobiDBLite consensus disorder prediction 372 404 - -
Lele21g0259 404 SUPERFAMILY RING/U-box 32 87 - -
Lele21g0259 404 Pfam Ring finger domain 38 80 IPR001841 -
Lele21g0259 404 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 11 89 - -
Lele21g0259 404 FunFam E3 ubiquitin-protein ligase RHF1A 25 92 - -
Lele21g0259 404 MobiDBLite consensus disorder prediction 185 222 - -
Lele21g0259 404 MobiDBLite consensus disorder prediction 185 225 - -
Lele21g0259 404 SMART ring_2 40 80 IPR001841 -
Lele21g0259 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 96 IPR013083 -
Lele21g0259 404 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0259 Lele-ChrLele21 1700992 1704106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0259 34 91 C3H Transcription Factor Family AT4G00335 46.552 1.69e-13 67.0