Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0240 ATGAATATCGTCTCGCTTTCTGTCTGCCAACAAGCTCGCCCCTTAGTGAATTTCCAAACCGGACTCCCCATGGAGCCTTTCTTCCGCCACCCCCTTAAAGATAAGGTGGTTGTCATACTCGGCGCCACCGGCACGGGCAAGTCCAGGCTCGCCATCGACCTCGCCACCTACTTCCCCCCGGCAGAGATCGTCAACTCTGACAAAATGCAAGTCTACCGCGGCCTCGACATCACCACCAACAAGGTAAGCGAAGAGGAATGTCGCGGCGTCCCTCACCACCTCCTCGGAATTGCCGATCCTAACTCCAATTTCACCGCTGATGACTTCACCCGCCACGCCTCCTCCGCCATTGATTCCATCGTCAGCCGAGATTGCTTCCCCATCATCGCGGGCGGCTCCAATTCTTACATTCGATCCCTTGTGGAGGATGACGCTGCGTTTCGGTTGAAGTACGAGTGTTTCTTTCTCTGGGTGGACGTCTCTCTGCCCGTCCTCGACTCATTCCTCTCGAAGCGGGTCGATCGGATGATCCAAGCGGGTCAGGTCGACGAGGTCCGTCAGCTTTTCGACCCGACCGCTGATTACTCGACCGGGATCAGAAAAGCCATTGGAGTACCTGAATTTGATGAATTCCTTAGAGAAGAGGCTACGGCCGATGAACGGACCAAGAAGAGGTTACTAGAGGCTGCCATTGCGAGGATCAGAGCCAATAATTGCTCACTCGCTCGTCGACAGCTTCAGAAGATTCATCGACTTTACAACAAGTGGAAGCGAAACATGTATCGCCTCGACGCCACCGAGGTGTTCATGAAATCCGGCGACAAGGCAGAGGAACTGTGGGAGACTCACGTGCTTGCCAAGAGCCAGAGGATCGTACACAAGTTCCTCTACGACGACAGTCTGGTGGTGCCGGCAGCCTCAGTAATGTCATCGGGGCCACCGTGTCAGCAGCCAAAGCAGGTGGCGATGGCCACCGCCAGTCATTAG 987 0.5542 MNIVSLSVCQQARPLVNFQTGLPMEPFFRHPLKDKVVVILGATGTGKSRLAIDLATYFPPAEIVNSDKMQVYRGLDITTNKVSEEECRGVPHHLLGIADPNSNFTADDFTRHASSAIDSIVSRDCFPIIAGGSNSYIRSLVEDDAAFRLKYECFFLWVDVSLPVLDSFLSKRVDRMIQAGQVDEVRQLFDPTADYSTGIRKAIGVPEFDEFLREEATADERTKKRLLEAAIARIRANNCSLARRQLQKIHRLYNKWKRNMYRLDATEVFMKSGDKAEELWETHVLAKSQRIVHKFLYDDSLVVPAASVMSSGPPCQQPKQVAMATASH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0240 328 Pfam IPP transferase 70 143 - -
Lele21g0240 328 Pfam IPP transferase 150 247 - -
Lele21g0240 328 Hamap tRNA dimethylallyltransferase [miaA]. 36 281 IPR018022 GO:0008033
Lele21g0240 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Lele21g0240 328 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 260 - -
Lele21g0240 328 Gene3D - 33 296 IPR027417 -
Lele21g0240 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 296 IPR039657 -
Lele21g0240 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 144 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0240 Lele-ChrLele21 1581130 1582116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0240 150 296 C2H2 Transcription Factor Family AT2G27760 31.609 1.40e-17 81.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0240 21 1581130 1582116 Lele23g1811 23 21579585 21580571 hybridization
Lele21g0240 21 1581130 1582116 Lele24g0238 24 1512826 1513818 hybridization