Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0200 ATGAAGTTATGCTTATTTTGCTTGCACAAGTTGCATACGATTCTGCCGGGGGCTCGTAGGGTTTCTCTATCTTTCTTTCTTCACTCAGCAAATTTTGCGCCAATGGCGAGATACCGAAGCCGGAGCAGAAGCTACAGCCCTCGCCGGCGAAGCGGAACCCCGCCGCGTGGACGCAAGCGGTACGACGATGAACCTCGTGATCGCCACCGTGAAAGCAGGTCCTACAGGGATCGCCGCTCTCCTGCTCCTTCAGGCTTGCTTGTCCGTAATCTTCCGCTCGATGCTAGGCCTGAAGATCTTAGGGGGCCCTTTGAGCGCTATGGCCCAGTGAAAGATGTATATCTTCCTAAGAATTACTACACTGGCGAGCCCCGGGGCTTTGGCTTTGTAAAATTCCGGTATGCTGAAGATGCTGCTGAAGCAAAGCAACAACTTAATCATACCGTTATTGGTGGACGGGAAATAAGAATTGTTTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTTCAAGTGCTCGCATAAGTGGTCGATATGGCGGAAATGGTAGAAGGAGAACTCCCACAAGATCCCCAAGGCGCCGATATCGTTCCTACTCAAGGTCTCTATCACCAGCTGGGGATCACACAAGGGATCATAAGGACAGGGACGATTATTATTCTCCTGAGCGATCAAGATCTTATTCCAGGTCTCCTTCGCCTCGTGGAAGGAAGGATTCCAGGAGGTCCCCAACTCCAAGGGAGAATGGTCGGAGTCCTGATGACAAGAGGGATCATACACGTAGTAGATCAGAGAGTCCCAGGGGCAATGGTCGCAGTCCCTCAAGGTCTCGTTCACGTTCATACAGTCCTCGTTGA 861 0.5099 MKLCLFCLHKLHTILPGARRVSLSFFLHSANFAPMARYRSRSRSYSPRRRSGTPPRGRKRYDDEPRDRHRESRSYRDRRSPAPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMRSSARISGRYGGNGRRRTPTRSPRRRYRSYSRSLSPAGDHTRDHKDRDDYYSPERSRSYSRSPSPRGRKDSRRSPTPRENGRSPDDKRDHTRSRSESPRGNGRSPSRSRSRSYSPR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0200 286 MobiDBLite consensus disorder prediction 268 286 - -
Lele21g0200 286 Gene3D - 35 174 IPR012677 -
Lele21g0200 286 MobiDBLite consensus disorder prediction 207 267 - -
Lele21g0200 286 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 36 176 - -
Lele21g0200 286 SUPERFAMILY RNA-binding domain, RBD 80 188 IPR035979 GO:0003676
Lele21g0200 286 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 81 283 - -
Lele21g0200 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Lele21g0200 286 SMART rrm1_1 85 158 IPR000504 GO:0003723
Lele21g0200 286 MobiDBLite consensus disorder prediction 164 286 - -
Lele21g0200 286 SMART rrm2_1 85 158 IPR003954 GO:0003676
Lele21g0200 286 MobiDBLite consensus disorder prediction 38 92 - -
Lele21g0200 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Lele21g0200 286 MobiDBLite consensus disorder prediction 56 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0200 Lele-ChrLele21 1338033 1342399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0200 76 171 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 2.20e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0200 21 1338033 1342399 Lele23g1852 23 21833540 21837705 hybridization