Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0197 ATGCAAGCAACTCAAGCGGCCACGAATGAAACTTCTGATAATTCACAAAAGACTGATCTTCAGTTAAACAAAGAAGTTTCAGATAATGGACCAAGTGGGAGGCGGCCAGATATTTCACTTCAAATCCCACCTAGACATTTAGGATTTGGAAGTACTCGCGGTGTAAGGTCTCTGGACCATTCTCAAAGCTTCTCTAGAGGGATTCCATCGCCGCGAGACTTTTTGCGGGCTTTGAGCCTCAAAAGGAAGGGCAACACAGCAGATGCTGAAAGAAGCAGCCTCCTCAGTTCAGATCCCAAGGCAGTTTCAGACAGTCCAAATATGGCCAACTTAACATCTGCAATTTCATGGAAAAGATGTACTTCTCTTCCTGTCACGCCTGCTACAAATCTGTCCCCTTCAGTTCCTACACCTGCTTCTGCAAGGACATACAGTGAACAGCCTAAACGCCATAAAGATGCTGTTGCTGCTGGTTCCAAAGTTTCAAGGTCCCTCTCTGTGCCTGGGCGGAATATGGTTATTGTGAGATCTTTGTCCTTTGCTGGCCGGAGTGAGCATGCGCAGCAAGATCAGAATGATGATCAAATAACTCCTGTGCCAGTAGAAGATGCTGATGAAGAAATTCCTGAAGAGGAAGCAGTTTGCAGAATCTGTTATGATGTCTGTGATGAAAGGAACACACTCAAATTGGAGTGCAGTTGTAAAGGCGACTTGACACTTGTTCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAATAAGAAATGTGATGTCTGTGGCCAAGAGGTTCAGAATTTACCTGTAACATTGCTTCGTTTGCCCAGCTCTGCTCAGACAGGAAGGAGACAGGTGCAGGGTCAGCAGAACATGAATCCCGAGAGATTAAGCGCTTGGCAAGACTTCGTGGTGCTTGTCCTAATAAGCACAATATGCTATTTTTTCTTCCTCGAGCAGCTACTGCTTCCTGACATGAAGACTCAAGCAATCATTATATCAGCACCATTTGCCTTTACCTTGGGTCTCTTGGCATCTATTTTTGCAGTCATCCTTGCAATAAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCTCTTGTGGCTATAACAGTACATGTGTTTTATTCTATGTTGCACTTGAAGGCCATTTATGCAATATTGCTTTCATCAGTTTTGGGTTTTGGTATGGCTATGAGCATCAACTATGTATATATCCAGTTTGTTTCTTGGCGTCTTCAAGTCTCCCATGATGCCAACCCAGCATGA 1272 0.4371 MQATQAATNETSDNSQKTDLQLNKEVSDNGPSGRRPDISLQIPPRHLGFGSTRGVRSLDHSQSFSRGIPSPRDFLRALSLKRKGNTADAERSSLLSSDPKAVSDSPNMANLTSAISWKRCTSLPVTPATNLSPSVPTPASARTYSEQPKRHKDAVAAGSKVSRSLSVPGRNMVIVRSLSFAGRSEHAQQDQNDDQITPVPVEDADEEIPEEEAVCRICYDVCDERNTLKLECSCKGDLTLVHEECAIKWFSTKGNKKCDVCGQEVQNLPVTLLRLPSSAQTGRRQVQGQQNMNPERLSAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIISAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHVFYSMLHLKAIYAILLSSVLGFGMAMSINYVYIQFVSWRLQVSHDANPA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0197 423 MobiDBLite consensus disorder prediction 127 162 - -
Lele21g0197 423 MobiDBLite consensus disorder prediction 85 107 - -
Lele21g0197 423 MobiDBLite consensus disorder prediction 1 28 - -
Lele21g0197 423 SUPERFAMILY RING/U-box 211 265 - -
Lele21g0197 423 CDD RING_CH-C4HC3_MARCH 215 262 - -
Lele21g0197 423 SMART ringv_2 214 262 IPR011016 GO:0008270
Lele21g0197 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Lele21g0197 423 PANTHER OS02G0165000 PROTEIN 47 418 - -
Lele21g0197 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Lele21g0197 423 MobiDBLite consensus disorder prediction 127 144 - -
Lele21g0197 423 MobiDBLite consensus disorder prediction 1 70 - -
Lele21g0197 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 269 IPR013083 -
Lele21g0197 423 MobiDBLite consensus disorder prediction 89 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0197 Lele-ChrLele21 1319439 1323398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0197 228 323 C3H Transcription Factor Family AT5G59000 33.333 2.07e-11 61.6