Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0196 ATGTTCTATAATTTCTCCGAGGATCTTGTTCAAAATAAAAGCATTATTAAAGTTAATGTCAGCGTTCCGAAAGGAACTATAATCCTACAAGCACCCTGGATATGCTGGAAATCGGATTATGATCTTACATCTTCTACTTACGGTCAAATGGCGAGGGAAGGAACGAGGAAGAATGGAACCTTAATTTGTGTCCCTATAATGGGAGAGTCAATTGACAAGATGAAGATTGATATGCACAAGGCTAAAGCTAGTGGTGCTGACCTTGTTGAAATACGATTGGACTTTTTGAAGAACTTCAGCCATTTTGAAGATTTAAACTCTCTAATTAAAGGGCGTCCTTTACCGGCAATATTTACTTATAGGCCAAACTGGGAAGGTGGCATGTATGATGGTGATGAAAACAAGCGATTGGATGCATTGCGATTAGCCATTGAGTTAGGAGCTGATTACATTGACGTTGAACTTAAGGTTGCTCATCAGTTCTATGACTCCATACGTGGAAAGGAACTCAACAAAACCAAGGTCATTGTTTCATCACACAATTACCAATACACTCCATCAGTTGAGGATCTTGCCAACCTGGTGGCGGAGATACAAGCCACTGGGGCAGACATTGTCAAGTTTGCAACAACTGCCTTGGATATCACTGATGTAGCACGCATTTTTCAAATAACAGCGCATTCTCAAGTTCCAATTATTGCACTTGCTATGGGTGATAAGGGCTTAATTTCACGTATACTTTGTGCAAAATTTGGTGGGTATCTCACTTTCGGAGCCCTTGAGGCTGGACTAGTTTCAGCTTCTGGTCAACCAACCATTAAGGATCTGCTGCATATATACAATTTCAGACAAGTAGGTCCTGATACAAAAGTACTTGGCATTATTGGAAAGCCAGTCGGCCACAGCAAATCACCCATATTGTTTAATAAAGCCTTCAAATCGATAGGTTTTGATGCTGTTTATGTTCATTTACTGGTCGATGACCTTGCCAACTTTCTCCAGACTTACTCATCCACAGATTTTGTTGGATTCAGTGTTACGATTCCTTACAAGGAAGCTGCACTTAAATGCTGTGACGAGGTGGACCCAGTAGCTAAGTCAATAGGAGCTGTGAATTGCGTTGTAAAGGGTTCAACTGATGGGAAGTTGATTGGATACAATACAGATTATGTTGGTGCCATTTCTTCCATTGAGGATGGTCTACGAGCCAAGGACTATAGCAAGACAGCTGCTTCACCATTAGCTGGTAAGCTGTTTGTTGTGATTGGAGCTGGTGGTGCTGGGAAGGCACTTGCTTATGGCGCAAAAGAAAAAGGAGCGAGGGTTGTGATTGCCAACCGCACCTATGATCGTGCCAGAGAACTTGCTGATGTGATTGGAGGAGACGCTTTAGCCCTTGCTGACTTAGATAATTATCACCCCGAGGATGGCATGATTCTAGCAAACACAACATCAATCGGGATGCAACCAAAAGTTGATGAAACGCCAATCTCCAAGCATGCTTTGAAGTACTACTCCCTGGTTTTTGACGCCGTCTACACCCCCAAAATGACTAGACTATTGAAGGAAGCTGAAGAGTCGGGAGCTACCATTGTTACAGGATTGGAGATGTTTTTAGGACAGGCTTATGAACAGTATGAGAAATTTACCGGATTGCCAGGTGAAAATTGCTGTTTCAATTCCGGCACTCCTCGAACCTTGAACCTCCGATTTCCTCCGTTCATCCCCTGCGAAGACTCCTGTGTTTTCTCTCGAAGTTTTTTAAGTGAAACTTATGTTTACACGCTGTCGTTTTCCTCTTGTCCATTTGAGAATGAGCCAGGCTTTTTTTCCGCTGGTTTATCTGGAGTGCAAATATTGTATTTTGGGTACTTGTGTGGTGCTGGAAGGTTTATATGGACTCCTAATTATTTGGTTAGGTTTTTCTCAGAGAAGTTATATATTAAATGTAGCTCGTTTTCTAATGCACTTGACCAGAAAGCTTGCTTTGAAGTTTTATTATCTTTATTTTTGATGGACTGCAATAAAGAAGAGGCCTTACGGGCCAAGGTCATTGCTGAAAAGAAGATGGAAAGTAAAGATTTTGTTGGGGCGCGTAAAATTGCTCTTAAAGCTCAGCAACTATATCCTGGTCTGGAGAATATAACTCAAATGCTTATTGTATGTGATGTGCATTGCTCTGCTGAGAAGAAATTGTTTGGGAATGAGATGGACTGGTATGGAATTCTTCAAATTGGGCAGTCAGCTGATGAAACAATGATAAAGAAACAATACAGGAAGTTTGCCCTCCAACTTCATCCTGACAAGAACAAGTTTTCTGGTGCAGAAGCTGCATTTAAGCTAATTGGGGAAGCTCAAAGAGTACTTTTGGATAAAAATAAACGGGCTCTACTTGACATGAAGTACAAAGTTCCTATGAACAGAACTTCAAAGCCATATCATCCACCCCCGGCACAGAAGTTTCATACAAATGTGAATGCTGGGGTGCAAAACAATGTCAGGGCCAATTTTTCCAATGTGAATCCTCAGAAGCAGCAACAGCGTAGGCAGTCAACTCAGCAGGGACCCAATGGTAGCCGCCCTACATTTTGGACTTTCTGCCCATTTTGTTCTAGTAGATATGAGTTGCACTCTGAAGCTGTAAATAGATCTGTTTCCTGTAACACTTGTCATAGGCCCTTTATTGCATATGTGCTAGGTACATCAGCAGCGTCGGCGGCAGCTAATTCAAGTTCTCAATCTTTTGGCCAACAAAAAGATGGTTTCAATCATGGTGCTGATGTTGGATCTCAAGGTATGAATGCTGGGAATGTCAATACAAAGCCTTCTGTGAAAAAAGGCCCCAACATCTCTGATAAGCTGAACAGAAAGAGAAAGAGGAAGAAGGTAGAAGAATCTAGTGAAAGTGCTGATTCGTTGGACAGCTATGAGTCTGAAGATGATATGGTTGTTGACAAGGATGGTGTTCCTGGTGAACAAAACTATCCAACTGATCGAGAACAGCATCGGCGTAGATCTGCAAGGTCTAAGCCTCAGGTTGTTTATAATGAGAATGGGAGTGATGATGATGATGACCTTTCAAAGCCCTCAACAGGGGCCAAGGGAAGTGGCTCATGCGGTGCAGAAGAAGACAATGGGGAGACAGCTAAAATGAATAATCAAAATGGCTCGGCTGCTGACCTGAAGGATGATCAGAAAGAGGTGAAACAGAAAGACAATCGTTATTCTGAAGAGAGCTTACACAAGAGAAATGAGGAAACTATGGGCACGGGGGGAAAAGAAGCAAACCAGTGCTCAAAGGGGACAGGAGAAGCAGAAGGTCCGACCTTTTTTGTCTATCCTGATGCAGACTTCAGTGACTTTGAAAAGGACAAGAAAGAAGATAGTTTTGCAAATGGACAGATTTGGGCTATATACGATACAATTGATGGCATGCCGAGATTCTATGCTTTGATCAGGAAAGTTCTCTCTCCTGGGTTCAAGCTGCGAATAACATGGTTTGAAGCAGAACCAGATGACGAGGATGAAATCAGCTGGGTAGAAAATAATCTGCCAGTTGCTTGTGGGAAATATGTGCTTGGCAACACTGAAATTTCTGAAGATCGTCTTATGTTCTCACATCTGATTTCATGTGAAAAGATTGGCCTCAGTACTTTCAAAGTTTATCCTAGGACGGGGGAAACTTGGGCTCTGTTTAAAAATTGGGATATCAAATGGTACACTGATGTGGAATCTCATCAGATGTATGAATTTGACTTTGTTGAAATTTTGTCCGATTATGTTGAAGGGGAGGGGGTATCTGTTGCATACTTGGAGAAGTTGAAAGGTTTTGTGAGTCTCTTCGCTCGAGCAAACAAGGGCAATATGGATTCATTTCGAATCCCATCAGCGGAGTTATTTAGATTCTCTCATAGGATTCCTTCATTTAAAATGACTGGTCAGGAAAGAGTAGGTGTCCCTAAAGGATCTTTTGAACTTGATCCTGCATCTTTGCCAGAAAATCTTGAATAG 4011 0.4196 MFYNFSEDLVQNKSIIKVNVSVPKGTIILQAPWICWKSDYDLTSSTYGQMAREGTRKNGTLICVPIMGESIDKMKIDMHKAKASGADLVEIRLDFLKNFSHFEDLNSLIKGRPLPAIFTYRPNWEGGMYDGDENKRLDALRLAIELGADYIDVELKVAHQFYDSIRGKELNKTKVIVSSHNYQYTPSVEDLANLVAEIQATGADIVKFATTALDITDVARIFQITAHSQVPIIALAMGDKGLISRILCAKFGGYLTFGALEAGLVSASGQPTIKDLLHIYNFRQVGPDTKVLGIIGKPVGHSKSPILFNKAFKSIGFDAVYVHLLVDDLANFLQTYSSTDFVGFSVTIPYKEAALKCCDEVDPVAKSIGAVNCVVKGSTDGKLIGYNTDYVGAISSIEDGLRAKDYSKTAASPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYDRARELADVIGGDALALADLDNYHPEDGMILANTTSIGMQPKVDETPISKHALKYYSLVFDAVYTPKMTRLLKEAEESGATIVTGLEMFLGQAYEQYEKFTGLPGENCCFNSGTPRTLNLRFPPFIPCEDSCVFSRSFLSETYVYTLSFSSCPFENEPGFFSAGLSGVQILYFGYLCGAGRFIWTPNYLVRFFSEKLYIKCSSFSNALDQKACFEVLLSLFLMDCNKEEALRAKVIAEKKMESKDFVGARKIALKAQQLYPGLENITQMLIVCDVHCSAEKKLFGNEMDWYGILQIGQSADETMIKKQYRKFALQLHPDKNKFSGAEAAFKLIGEAQRVLLDKNKRALLDMKYKVPMNRTSKPYHPPPAQKFHTNVNAGVQNNVRANFSNVNPQKQQQRRQSTQQGPNGSRPTFWTFCPFCSSRYELHSEAVNRSVSCNTCHRPFIAYVLGTSAASAAANSSSQSFGQQKDGFNHGADVGSQGMNAGNVNTKPSVKKGPNISDKLNRKRKRKKVEESSESADSLDSYESEDDMVVDKDGVPGEQNYPTDREQHRRRSARSKPQVVYNENGSDDDDDLSKPSTGAKGSGSCGAEEDNGETAKMNNQNGSAADLKDDQKEVKQKDNRYSEESLHKRNEETMGTGGKEANQCSKGTGEAEGPTFFVYPDADFSDFEKDKKEDSFANGQIWAIYDTIDGMPRFYALIRKVLSPGFKLRITWFEAEPDDEDEISWVENNLPVACGKYVLGNTEISEDRLMFSHLISCEKIGLSTFKVYPRTGETWALFKNWDIKWYTDVESHQMYEFDFVEILSDYVEGEGVSVAYLEKLKGFVSLFARANKGNMDSFRIPSAELFRFSHRIPSFKMTGQERVGVPKGSFELDPASLPENLE 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0196 1336 Pfam Domain of unknown function (DUF3444) 1111 1315 IPR024593 -
Lele21g0196 1336 TIGRFAM aroE: shikimate dehydrogenase 290 552 IPR011342 GO:0004764|GO:0019632|GO:0050661
Lele21g0196 1336 MobiDBLite consensus disorder prediction 839 859 - -
Lele21g0196 1336 Hamap Shikimate dehydrogenase (NADP(+)) [aroE]. 289 570 IPR022893 GO:0004764
Lele21g0196 1336 CDD NAD_bind_Shikimate_DH 436 551 - -
Lele21g0196 1336 SUPERFAMILY Chaperone J-domain 734 805 IPR036869 -
Lele21g0196 1336 MobiDBLite consensus disorder prediction 1060 1089 - -
Lele21g0196 1336 SMART dnaj_3 737 794 IPR001623 -
Lele21g0196 1336 PANTHER SHIKIMATE DEHYDROGENASE 58 553 IPR022893 GO:0004764
Lele21g0196 1336 Pfam Shikimate dehydrogenase substrate binding domain 294 374 IPR013708 GO:0004764
Lele21g0196 1336 MobiDBLite consensus disorder prediction 911 1103 - -
Lele21g0196 1336 FunFam Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 289 386 - -
Lele21g0196 1336 Gene3D - 387 558 - -
Lele21g0196 1336 Pfam DnaJ domain 738 799 IPR001623 -
Lele21g0196 1336 Pfam Shikimate / quinate 5-dehydrogenase 411 485 IPR006151 -
Lele21g0196 1336 Pfam Type I 3-dehydroquinase 63 280 IPR001381 GO:0003855
Lele21g0196 1336 Gene3D Leucine Dehydrogenase, chain A, domain 1 289 386 - -
Lele21g0196 1336 MobiDBLite consensus disorder prediction 982 1007 - -
Lele21g0196 1336 TIGRFAM aroD: 3-dehydroquinate dehydratase, type I 62 280 IPR001381 GO:0003855
Lele21g0196 1336 ProSiteProfiles dnaJ domain profile. 738 802 IPR001623 -
Lele21g0196 1336 FunFam bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 56 288 - -
Lele21g0196 1336 PRINTS DnaJ domain signature 740 758 IPR001623 -
Lele21g0196 1336 PRINTS DnaJ domain signature 774 794 IPR001623 -
Lele21g0196 1336 PRINTS DnaJ domain signature 758 773 IPR001623 -
Lele21g0196 1336 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 281 388 IPR046346 -
Lele21g0196 1336 CDD DnaJ 738 791 IPR001623 -
Lele21g0196 1336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 408 552 IPR036291 -
Lele21g0196 1336 MobiDBLite consensus disorder prediction 930 946 - -
Lele21g0196 1336 Gene3D Aldolase class I 56 288 IPR013785 -
Lele21g0196 1336 SUPERFAMILY Aldolase 55 283 - -
Lele21g0196 1336 Gene3D DnaJ domain 735 855 IPR036869 -
Lele21g0196 1336 Hamap 3-dehydroquinate dehydratase [aroD]. 61 283 IPR001381 GO:0003855
Lele21g0196 1336 FunFam Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 387 563 - -
Lele21g0196 1336 CDD DHQase_I 61 282 IPR001381 GO:0003855
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0196 Lele-ChrLele21 1301665 1317273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0196 675 896 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.921 5.09e-26 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0196 21 1301665 1317273 Lele23g1857 23 21859366 21863448 hybridization
Lele21g0196 21 1301665 1317273 Lele24g0189 24 1247916 1255424 hybridization