Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0186 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTATTTGGTGAAGAAAAAATTGCATAATACTGCCAAGTCATTCATGACTGAAGGAAAGGTTGCGCCAGATCCAGTAGCAATTGATGCTCCTGGGGGGTTTCTTTTTGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCAAGGACAAACGAGAAACATTCCGAGTCTGCTGCAGCATATTTGGAGGCTCAACAGATTAAAGCAAAAGAACAGCAGCAGCTGCAAATGCAGCAGTTACAACTTATGCGCCAAGCTCAGCTTCAAAGAAGGGATCCGAATCATCCTCCTCATGGTGGTACTGTAAATGCTATTTCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCAAAAATGTACGAGGAACGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAACCACTTATAGATGCTAGAATGGCCCTTTTGAAGTCAACAACCAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGGAAGTGTGACTGCAGCTTTGCAACACATGCAGGCTCGAAATCAGCAACCTCCTCAGGACATTAAAAGTGAAGTCAACATAGGCATGATGCAACGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAACGCAATCAAGACCAGGAGTAGTAAATCCAGGACTGAATCCAGGAGTTGGTGGTCTCACACTGAAGGGATGGCCTTTAACTGGCATAGATCAAATTCGGCCGGGTTTGGGAGCACAAGTTCAAAAACCTCTACTTCAAAGTGCCAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAACAACTCTTGGCACAGGTTCAGGGACAAGGAAATATTACCAGTTCATCAATGTATGCAGATATGGATCCTCAACGGTTGAGGGGATTAGCTAGGGGTAGTCTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCGATGCAATCCACTTCATCTAAGATCAACATGCCACAGATGCAACAATCTACCACTCAGCAACAGCAGGATCCTTTGCACCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGGGCTGCCAACAGCACTGGTACAGGAAACACGATCGGCCCTTCCAATTCCCAGCCATCAACCCCATCTACTCATACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGCTCGATGATGTATGGTGCTGATGGCACGGGTGGTCTTGCTTCGTCCACAAATCAACTGTTGCAGGATGACATGGAACGTTTCGGAGATGTTTGCTCCTTAGATGATAATGTGGAGTCATTTCTTTCACATGATGATGGTGATGGAAGAGATTTGTTTGGCACCTTGAAACGGAACACTTCTGAGCACACAACAGATGCATCAAAAGGCTTTTCCTTTAGTGAAGTCGGCTCCATACGCAAGAGCAATGGCAAAGTAGTGTGCTGTCACTTCTCATCAGATGGGAAGTTATTGGCCAGTGCCGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCACTTCAGAGGAACACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTTGCTACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCCAAACTACTTTTGTTTGCAGACATATGCAGGCCATACCTCTCATGTGATGTCCCTTGATTTCCATCCAAAGAAAAATGACCTTTTCTGTACTTGCGATGCCAACAATGAAATTCGCTTTTGGAATATTAGTCAATATTCCTGCACTCGCGTTTCCAAGGGAGGCTCTGCACAGGTAAGGTTTCAGCCAAGAATAGGACACTTTCTGGCTGCAGCGGCTGGTAATGTTGTATCCCTCTATGACGTTGAGACTGACAGGCTGGTTCAGTCATTACAGGGGCACACTACAGATGTTCATTCTGTCTGTTGGGATACCAGTGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGGGTGTGGTCATTGGCCTCTGGGGATTGCATTCACGAGCTTGGCTCCAGCGGGAACATGTTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCAGAGAATAAATGCATGACAATACCAGCTCATGAGTGTGTGATATCGGCTTTAGCACAATCACCAGTGTCAGGAATGGTTGCTTCTGCGAGTCATGACAAGTCCGTCAAGATTTGGAAATGA 2367 0.4546 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQIKAKEQQQLQMQQLQLMRQAQLQRRDPNHPPHGGTVNAISSEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTGSVTAALQHMQARNQQPPQDIKSEVNIGMMQRSLPMDPSSIYGQGATQSRPGVVNPGLNPGVGGLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQGQGNITSSSMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPMQSTSSKINMPQMQQSTTQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGSMMYGADGTGGLASSTNQLLQDDMERFGDVCSLDDNVESFLSHDDGDGRDLFGTLKRNTSEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESTSEEHTLIITDVRFRPNSSQLATSSFDTTVRLWDAADPNYFCLQTYAGHTSHVMSLDFHPKKNDLFCTCDANNEIRFWNISQYSCTRVSKGGSAQVRFQPRIGHFLAAAAGNVVSLYDVETDRLVQSLQGHTTDVHSVCWDTSGDYLASVSQESVRVWSLASGDCIHELGSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVSGMVASASHDKSVKIWK 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0186 788 PRINTS G protein beta WD-40 repeat signature 525 539 IPR020472 -
Lele21g0186 788 PRINTS G protein beta WD-40 repeat signature 567 581 IPR020472 -
Lele21g0186 788 PRINTS G protein beta WD-40 repeat signature 775 788 IPR020472 -
Lele21g0186 788 CDD WD40 502 788 - -
Lele21g0186 788 Pfam WD domain, G-beta repeat 588 625 IPR001680 GO:0005515
Lele21g0186 788 Pfam WD domain, G-beta repeat 511 538 IPR001680 GO:0005515
Lele21g0186 788 Pfam WD domain, G-beta repeat 754 788 IPR001680 GO:0005515
Lele21g0186 788 Pfam WD domain, G-beta repeat 670 705 IPR001680 GO:0005515
Lele21g0186 788 Pfam WD domain, G-beta repeat 550 580 IPR001680 GO:0005515
Lele21g0186 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 634 IPR001680 GO:0005515
Lele21g0186 788 Gene3D - 474 640 IPR015943 GO:0005515
Lele21g0186 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 592 627 - -
Lele21g0186 788 Coils Coil 87 107 - -
Lele21g0186 788 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 788 IPR044716 GO:0003714
Lele21g0186 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 756 788 IPR001680 GO:0005515
Lele21g0186 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 674 714 IPR001680 GO:0005515
Lele21g0186 788 Gene3D - 641 788 IPR015943 GO:0005515
Lele21g0186 788 SMART WD40_4 585 625 IPR001680 GO:0005515
Lele21g0186 788 SMART WD40_4 708 747 IPR001680 GO:0005515
Lele21g0186 788 SMART WD40_4 499 538 IPR001680 GO:0005515
Lele21g0186 788 SMART WD40_4 541 580 IPR001680 GO:0005515
Lele21g0186 788 SMART WD40_4 667 705 IPR001680 GO:0005515
Lele21g0186 788 SMART WD40_4 628 664 IPR001680 GO:0005515
Lele21g0186 788 SMART WD40_4 749 788 IPR001680 GO:0005515
Lele21g0186 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 756 788 - -
Lele21g0186 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 580 IPR001680 GO:0005515
Lele21g0186 788 Pfam LisH 10 36 IPR006594 GO:0005515
Lele21g0186 788 MobiDBLite consensus disorder prediction 109 128 - -
Lele21g0186 788 SUPERFAMILY WD40 repeat-like 500 788 IPR036322 GO:0005515
Lele21g0186 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 506 541 - -
Lele21g0186 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 548 580 - -
Lele21g0186 788 MobiDBLite consensus disorder prediction 334 409 - -
Lele21g0186 788 ProSitePatterns Trp-Asp (WD) repeats signature. 525 539 IPR019775 -
Lele21g0186 788 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lele21g0186 788 MobiDBLite consensus disorder prediction 322 414 - -
Lele21g0186 788 SMART Lish 8 40 IPR006594 GO:0005515
Lele21g0186 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 506 547 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0186 Lele-ChrLele21 1214406 1221049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0186 524 748 U-box Gene Family AT2G33340 27.731 5.37e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele21g0186 WD40 0.0039 CL0186