Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0167 ATGATGATGATGAACAACGTTAGAAGTAATAACAATATGCAAAAGTTCAAAGGCGTAGTGCCTCAGCAAAATGGTCATTGGGGTGCTCAAATATACGCAAACCACCAAAGAATATGGCTTGGAACCTTCAAATCCGAACGAGAAGCAGCCATGGCTTACGACAGCGCCACCATCAAGCTCCGACGTGGCGAAAGCCACCGGAACTTCCCGTGGAACCATCAAACGGTTCAAGAGCCTCTTTTCCAAAGCCATTACAGCACCGAAGCAGTGCTAAGCATGATCAGAGATGGTACCTATCCTTCCAAGTTTGCTTCTTTTCTCTTCAGCACCCAAACCCTAACCCTAACCCTAAATGGCGTCGTCGACGAACAAATAACAACAAGTGCCAGAAATAACGTTAAAGGTGAAGAAAAATTCTCCTGCACCCAACTTTTCCAGAAGGAACTTACACCAAGTGACGTGGGAAAACTCAATAGGCTCGTCATCCCCAAGAAACATGCAAGTAGGTATTTCCCTTGTTTTTCTGAAGCCGACAATAATAATGATAATTATGGGACGATGATGGATATTGATAATAGTGACACAGAGCTTGTGTTTTACGACAAGCTAATGAGATCGTGGAAATTTAGATACTGTTATTGGAGAAGCAGTCAAAGCTTTGTGTTCACGAGGGGTTGGAATAGGTTTGTGAAAGACAAGAGATTGAAGGCTAAGGATGTTATTGCATTTTATAAGTGTGAGCCTATAATTAATAATAATGGGGGTCAAGTTTTTTATTTGGTTGATGCTATCTATAATAATGAAGATACTAATGTAAATGAGAGCTCGAGGACGCAGTCTTCTGGAAAAATGTTGAGTTTCGACAATATTCGAACAGAAGAAGACGAAGATGACGATTACGATGACCGCGACGAGACAGAAGAGAGAAAAGAAATGTTGCCTTCTCCGACAGATCATGTTGAACCAAAGGGTTTGAAGCTTTTTGGTGTAAGACTTAACTGA 1002 0.4142 MMMMNNVRSNNNMQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRRGESHRNFPWNHQTVQEPLFQSHYSTEAVLSMIRDGTYPSKFASFLFSTQTLTLTLNGVVDEQITTSARNNVKGEEKFSCTQLFQKELTPSDVGKLNRLVIPKKHASRYFPCFSEADNNNDNYGTMMDIDNSDTELVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKDKRLKAKDVIAFYKCEPIINNNGGQVFYLVDAIYNNEDTNVNESSRTQSSGKMLSFDNIRTEEDEDDDYDDRDETEERKEMLPSPTDHVEPKGLKLFGVRLN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0167 333 Gene3D AP2/ERF domain 14 71 IPR036955 GO:0003700|GO:0006355
Lele21g0167 333 Pfam B3 DNA binding domain 145 244 IPR003340 GO:0003677
Lele21g0167 333 SUPERFAMILY DNA-binding pseudobarrel domain 143 246 IPR015300 -
Lele21g0167 333 SMART rav1_2 15 76 IPR001471 GO:0003700|GO:0006355
Lele21g0167 333 CDD AP2 14 72 IPR001471 GO:0003700|GO:0006355
Lele21g0167 333 ProSiteProfiles AP2/ERF domain profile. 15 70 IPR001471 GO:0003700|GO:0006355
Lele21g0167 333 ProSiteProfiles B3 DNA-binding domain profile. 145 264 IPR003340 GO:0003677
Lele21g0167 333 MobiDBLite consensus disorder prediction 291 305 - -
Lele21g0167 333 Pfam AP2 domain 15 61 IPR001471 GO:0003700|GO:0006355
Lele21g0167 333 SMART B3_2 145 264 IPR003340 GO:0003677
Lele21g0167 333 CDD B3_DNA 144 244 IPR003340 GO:0003677
Lele21g0167 333 MobiDBLite consensus disorder prediction 272 287 - -
Lele21g0167 333 Gene3D - 140 270 IPR015300 -
Lele21g0167 333 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 331 IPR044800 GO:0003700
Lele21g0167 333 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Lele21g0167 333 MobiDBLite consensus disorder prediction 272 322 - -
Lele21g0167 333 FunFam AP2 domain-containing protein RAP2.8 14 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0167 Lele-ChrLele21 1094194 1095195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0167 11 247 RAV Transcription Factor Family AT1G51120 60.251 5.98e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Lele21g0167 B3 2.4e-24 CL0405