Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0117 ATGGCTGCTACACTTGTGCTTTCTGCCCATTTCTCTTCTATACCCCATAAAACCCGTAACCGATCACTTTCTCTGTCCTCTTCTTCGGTCTCCACCGCAGTTTTCATGAACTCCGTATCAAAACCAAATAAAAATGATATTTTTTTCTTAAAGAACCCTTCAAAAGAAGTGCTAATTTCTCGGAAATTCATTGCTTGTACTTCTATTGGAGACACTGAACCGAAAGATTCCGGCTTGGTGGGCGAGGACTCTGCAGCGTTTGATTTTGAGGAGCAGAAGATATCTTCGTGGATTTATTTCACGGTGATTTTGGGTGTAGTTCTGATTGTTCTTAATGTAGTTTGGATCGACAATTCCACCGGGTACGGTAAAGCTTTTATTGAGGCGGTTTCAGGACTTTCAGATAGTCATGAGGTGGTAATGTTGATCCTGATACTCATATTTGCCGGTGTCCACAGTGGCATGGCTAACTTTCGAGACACTGCTGAGAAGCTCATCGGAGAAAGAGCTTATCGTGTTCTTTTTGCCGGGATATCACTACCCTTGGCTGTCAGTACAGTTGTATATTTTATTAACCACAGATATGATGGACTTCAACTCTGGCAAGTCCAGAATGGTCCTGGGGTTCACCAACTTGTATGGCTGGCCAATTTCGTTTCCTTCTTTTTCCTATATCCTTCGACATTTAATCTTCTAGAAGTTGCAGCAGTTGACAAACCTAAGTTACATCTCTGGGAAACTGGCATCATGAGAATAACCAGACATCCTCAGATGGTTGGGCAGGTTATGTGGTGTGTAGCTCACACAATTTGGATTGGAAATTCTGTGGCTGTTGCTGCTTCTGTGGGCTTAATTGCACATCATCTATTCGGTGTTTGGAACGGAGACAGGCGACTCGGCAGAAGATACGGCGAGGATTTTGAGACTGTTAAAGCTAGAACTAGCATAGTCCCGTTTGCAGCGATCCTTGATGGCCGGCAAAAGTTGCCGAAAGATTACTACAGGGAGTTTATCAGGTTGCCATACTTGACAATCACTGCAGTAACATTAGGAGCTTACTTTGCCCATCCCCTTATGCAAGCTGCTAGTTTCAACCTTCATTGCCATTATGTTAATGGGCATGCAATTGCAAAGTGGTTAAAGAATCGCATCTATAAGAGTAATCAAAATGGCCTTGCAACCGCCCTTCTCTATCCTTCACTTATATTTATGATGTTGAAATCTGTTTGCCAAATTCTGCAGAAGAACAAGAATCGACCAGTGAATAAGTGCAACGTCTGCTTAGAGCTCACCACCCAATACTGTAACTGCGGCCACGCCATTATTAATGAGGATGAAAACACATCTGATTCTGACCGCAACAGTTCTTCTGCTCATACTGTCGTCAATATGGTTGGCATGCTCACAGGTTTGGGGCAATTATCAGCGTCATATGCTGTAGTAGAGGGAGGGTGGGCGTGTGCAGTAATGTTCCTGATGGGCCTTGCAATAACGTGTGCTTATAGCTGTCGTCTTCTTGGGAAATGCATGGGCAAGAACCCGAAGCTCCGAAGCTACGTAGACATTGGTGAACATGCATTCGGATCAAAAGGAAGAATTCTGGCTTCAACCCTCATCTACACTGAGATCTTCATGGCCCTTGTCTCCTACACCAACTGA 1659 0.44 MAATLVLSAHFSSIPHKTRNRSLSLSSSSVSTAVFMNSVSKPNKNDIFFLKNPSKEVLISRKFIACTSIGDTEPKDSGLVGEDSAAFDFEEQKISSWIYFTVILGVVLIVLNVVWIDNSTGYGKAFIEAVSGLSDSHEVVMLILILIFAGVHSGMANFRDTAEKLIGERAYRVLFAGISLPLAVSTVVYFINHRYDGLQLWQVQNGPGVHQLVWLANFVSFFFLYPSTFNLLEVAAVDKPKLHLWETGIMRITRHPQMVGQVMWCVAHTIWIGNSVAVAASVGLIAHHLFGVWNGDRRLGRRYGEDFETVKARTSIVPFAAILDGRQKLPKDYYREFIRLPYLTITAVTLGAYFAHPLMQAASFNLHCHYVNGHAIAKWLKNRIYKSNQNGLATALLYPSLIFMMLKSVCQILQKNKNRPVNKCNVCLELTTQYCNCGHAIINEDENTSDSDRNSSSAHTVVNMVGMLTGLGQLSASYAVVEGGWACAVMFLMGLAITCAYSCRLLGKCMGKNPKLRSYVDIGEHAFGSKGRILASTLIYTEIFMALVSYTN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0117 552 PANTHER 15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC 1 367 - -
Lele21g0117 552 Pfam Transmembrane amino acid transporter protein 454 551 IPR013057 -
Lele21g0117 552 Pfam NnrU protein 140 359 IPR009915 -
Lele21g0117 552 Gene3D - 134 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0117 Lele-ChrLele21 747537 753312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0117 424 551 Amino Acid or Auxin Permease AAAP Family AT5G16740 47.656 1.75e-29 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0117 21 747537 753312 Lele23g1932 23 22402994 22412198 hybridization
Lele21g0117 21 747537 753312 Lele24g0112 24 715706 716902 hybridization