Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0088 ATGGACGCAGCGCCACCTTCGTCCGCGGGCTCCGGCGCTGGAGGCGGCGGAACTGGAGGTCCAGCACCTTTTCTCATCAAGACCTATGAAATGGTCGACGATTCTTCCACCGACGATATTGTATCGTGGAGCCCCACCAACAACAGCTTCGTCGTCTGGAATCCCCCCGAGTTCGGTCGTCATCTTCTTCCTACCTATTTCAAGCACAACAACTTCTCTAGCTTCATCCGTCAGCTCAATACCTACGGATTTCGAAAAATGCATCCTGAGCGATGGGAGTTCGCTAATGATGATTTCATAAAAGATCAAAAGCATCTTCTCAAGAATATTCACCGCAGGAAACCTATCCACAGTCACAGCCATCCTCCAGGCTCTGTTGTGGACTCAGAACGGGCAGCATTTGAGGAAGAAATAGAGAAACTTACACATGAGAAATCTGCTCTTGAGTCCAACATCGTCAGATTTAAACAACACTCATCTGCAAAGCTTCAGCTAGAAGATCTATTGCAGCGATTAGACAGTATGGAGAAGAGACAGAAGAATTTGCTGAACTTCTTTGAAAAGTCTCTTCAGAATCCTTGTTTTGTTGAACATCTTTCACGGAAACTTGATTGCATGGATTTGTCAGCATATAATAAGAAAAGAAGATTACCTCAGGTTGATCACTTGCAGCCAGTTGGTGAAAGTAACTTAATTGAAAATCAAAGCAATTTTAGAACAGAATTTGGCACTGTCTTCCACCAAGATTTCTCAAATAAACTCAGATTGGAGTTATCGCCAGCTGTTTCTGATATGAATTTGGTATCCCGTAGCACTCAGAGTTCCAATGAAGATGGAGAAAATCCACAGAAGAAGCTATATGAAGGAACACCCAAAGGAGTACAAACAAGAACAACTCTCGCATTTGCGCCTGAAACACTAGAGCTTGCAGATACTGGAGCATCTTTTTCTTTTAAGATGGATTCATGTCCATCCCAGAGAGCAACAACTGGTGAGAGCACGAAACTGCACACTTTGCATCTAAGCAATGAAGAAGGTGACAGTCATATATCCTGCCATCTAAATTTGACTCTGGCATCTTCTCCTTTGCAAGTCAACAGAAATTCATACTCGGCTAGATCACCCCAAATAGACTGCCAGGAGATAGGCAAGTTGGCAGAATCAAGATTTCACGAAAACGATAAAGATTCTAATAGTGGAGTTCCTTCAACCAGAAATCCAGCTCAGGAGGTTGCCAATTTAACTTCCTCACAGTCGAAGGAGACTCCAAGCAGCAACCAAGCACCACAGGCTGCTCCAGCCAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCTGGTTGTTCAGACAATGAAGAGGCAATATCTAACTATAGAGCAAATCCATATGAAGAGCAAGAGGAAGGGCGGTCAATTCCTGGAATCTCCAGAAATGTTAAGAATATGGATCGGCTCACACTTTGA 1473 0.4372 MDAAPPSSAGSGAGGGGTGGPAPFLIKTYEMVDDSSTDDIVSWSPTNNSFVVWNPPEFGRHLLPTYFKHNNFSSFIRQLNTYGFRKMHPERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGSVVDSERAAFEEEIEKLTHEKSALESNIVRFKQHSSAKLQLEDLLQRLDSMEKRQKNLLNFFEKSLQNPCFVEHLSRKLDCMDLSAYNKKRRLPQVDHLQPVGESNLIENQSNFRTEFGTVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGENPQKKLYEGTPKGVQTRTTLAFAPETLELADTGASFSFKMDSCPSQRATTGESTKLHTLHLSNEEGDSHISCHLNLTLASSPLQVNRNSYSARSPQIDCQEIGKLAESRFHENDKDSNSGVPSTRNPAQEVANLTSSQSKETPSSNQAPQAAPARVNDVFWEQFLTERPGCSDNEEAISNYRANPYEEQEEGRSIPGISRNVKNMDRLTL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0088 490 Gene3D - 19 114 IPR036388 -
Lele21g0088 490 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Lele21g0088 490 MobiDBLite consensus disorder prediction 399 432 - -
Lele21g0088 490 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele21g0088 490 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele21g0088 490 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele21g0088 490 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele21g0088 490 Coils Coil 131 185 - -
Lele21g0088 490 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele21g0088 490 MobiDBLite consensus disorder prediction 391 433 - -
Lele21g0088 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 283 IPR027725 -
Lele21g0088 490 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele21g0088 490 MobiDBLite consensus disorder prediction 268 292 - -
Lele21g0088 490 FunFam Heat shock transcription factor 1 17 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0088 Lele-ChrLele21 567665 570813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0088 1 490 HSF AT4G13980 54.839 1.02e-170 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele21g0088 HSF_DNA-bind 2.2e-31 CL0123