Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0081 ATGTTGAGTCCGAGATTCGCTGGTTTTCTGGTTAATGCGACGCTGAAGTCTGTCGACAGTTGGCATAAACTTGTAGTTATAATGGCATTTTGCAACAAACTTGGGAATCTATTAAGGCAGGGTGCTGCACAAAACAGACAAGTACCAGTTGCATCAGTGCTGAATTATGTTCGCTGCATGTCATCCTCCAAGCTCTTCATTGGCGGCCTTTCTTATGCAGTTGATGATCAGTCTCTCAGGGATGCGTTTGCCAACTTTGGAGATGTGGTCGAGGCAAGGGTTATAGTTGATAGAGACACTAATAAGTCAAGAGGTTTTGGATTTATCAATTTCTCCAGTGAAGAATCTGCTAGTTCAGCTATTTCTGCAATGGATGGGCAGGAGCTAAGTGGGAGAAACATTAGGGTGAGCTATGCAACTGACAGACCACCCAGACCTCGATCCTTTGGTGGTGGTGGTGGTTTTGGTGGCGGTTATGGTGGAAATGGTGGTGGTTATCGTAGGGATGATGGAGGTTTTGACAATCCATCCTTTTAA 537 0.4507 MLSPRFAGFLVNATLKSVDSWHKLVVIMAFCNKLGNLLRQGAAQNRQVPVASVLNYVRCMSSSKLFIGGLSYAVDDQSLRDAFANFGDVVEARVIVDRDTNKSRGFGFINFSSEESASSAISAMDGQELSGRNIRVSYATDRPPRPRSFGGGGGFGGGYGGNGGGYRRDDGGFDNPSF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0081 178 Gene3D - 54 175 IPR012677 -
Lele21g0081 178 SMART rrm1_1 64 137 IPR000504 GO:0003723
Lele21g0081 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Lele21g0081 178 SUPERFAMILY RNA-binding domain, RBD 58 171 IPR035979 GO:0003676
Lele21g0081 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 135 IPR000504 GO:0003723
Lele21g0081 178 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 37 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0081 Lele-ChrLele21 539406 541151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0081 62 155 Eukaryotic Initiation Factors Gene Family AT1G49760 37.234 8.36e-13 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0081 21 539406 541151 Lele23g1972 23 22619400 22621252 hybridization
Lele21g0081 21 539406 541151 Lele24g0077 24 508343 509574 hybridization