Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0048 ATGCGATCTTCATGGGCAGATTTGGCTGCGAGCTCTGCAGCTGAAAGTGCAGGTCCTGGCTCTTCTGCCAGCAATGTGGGAACAGGTAACACTTCCGCTCCTTCACGCCCAGTCTATGTTCCTCCACATCTTCGGAATCGTCCACCATCTGCAGAAGCTCCTGCTCCAGCAAATAGTGGCCGTACTTCTGGTTCTGGTATTGGTACTGGCATTGGTAATGTTGGATCACGTTTGGCTGCGCCCAGAAATGAGAATCGATTTGGGTATGGTGGCAGTAGTCGTGCTGGATGGGGAAACAGGGGCAGTGGTTGGGACCGTGGCAGGGAGAGGGAGGCCAATCCCTTTGGCGATGAGGATAATGCAGAAGAGGCATTTGGTGAGCAGGAGAATACAGGAATCAATTTTGATGCATATGAAGACATTCCCGTGGAGACTAGTGGCGCGAATGTGCCACCACCAGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAACATACGAAGGTGCAAATATGTGAAGCCAACACCAGTTCAACGATACGCCATACCGATATCCCTTGCTGGACGAGACTTGATGGCTTGTGCCCAGACGGGTTCTGGAAAGACAGCTGCTTTCTGTTTTCCCATCATCAGTGGAATTATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCACTTGCTCTTGTTCTCTCACCTACTAGGGAGCTATCAATGCAAATACATGAAGAAGCCAGGAAGTTTTCTTACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGTGCACCAATACACCAGCAGCTGCGAGATCTCGAGAGAGGAGTTGACATTCTTGTGGCAACTCCTGGAAGACTGGTGGATTTGCTGGAGAGGGCTAGAGTTTCACTGCAGATGATAAGATATTTGGCCTTAGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAGATAAGGAAAATTGTGGAGCAGATGGACATGCCTCCACCTGGTGCCAGACAGACTATGCTGTTCAGTGCCACATTTCCTAAAGAGATACAGAGATTGGCGTCGGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGTTCAAGTACAGATTTGATTGTCCAAAGAGTTGAATTTGTTCAGGAGTCTGATAAGAGAAGTCACCTCATGGACCTTCTTCATGCTCAGAGGGCAAATGGTGTGCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCATTGGAACACTGGCTGTGTATTAATGGTTTTCCAGCTACCACTATTCACGGGGATAGGACACAACAGGAAAGGGAAATGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATACTGGTTGCCACTGATGTGGCTGCACGAGGTCTTGATATTCCTCATGTTGCCCATGTGGTCAACTTTGATCTACCAAATGATATTGACGATTATGTACACCGGATTGGAAGGACGGGAAGAGCAGGAAAGAAGGGTCTTGCTACTGCATTCTTCAATGAAAACAACGCATCCCTTTCGAGGGCTTTAGCAGATCTGATGCAAGAAGCTAACCAAGAGGTGCCTGCTTGGCTCTCACGGTATGCTGCGCGATCATCTTTTGGTGGAAGGAACCGTCGATCAGGAGGAGGTCGTTTTGGTGGGCGTGACTTCCGAAGAGAGAGCTTTAACAGCAGAGGTGGTTCTGATTATTACAGTGCGGGAAATAGCAGCGGTGGGTATGGGGCTTCTGGTGGGTATGCTGGAGGATATGGTCCCGGTGTCACAAGTGCGTGGGATTGA 1842 0.4875 MRSSWADLAASSAAESAGPGSSASNVGTGNTSAPSRPVYVPPHLRNRPPSAEAPAPANSGRTSGSGIGTGIGNVGSRLAAPRNENRFGYGGSSRAGWGNRGSGWDRGREREANPFGDEDNAEEAFGEQENTGINFDAYEDIPVETSGANVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPIHQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCINGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNASLSRALADLMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRRESFNSRGGSDYYSAGNSSGGYGASGGYAGGYGPGVTSAWD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0048 613 Pfam DEAD/DEAH box helicase 179 360 IPR011545 GO:0003676|GO:0005524
Lele21g0048 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 371 IPR014001 -
Lele21g0048 613 MobiDBLite consensus disorder prediction 1 35 - -
Lele21g0048 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 526 IPR027417 -
Lele21g0048 613 MobiDBLite consensus disorder prediction 56 70 - -
Lele21g0048 613 SMART ultradead3 174 386 IPR014001 -
Lele21g0048 613 MobiDBLite consensus disorder prediction 1 119 - -
Lele21g0048 613 FunFam Probable ATP-dependent RNA helicase DDX4 117 373 - -
Lele21g0048 613 Pfam Helicase conserved C-terminal domain 395 510 IPR001650 -
Lele21g0048 613 SMART helicmild6 429 510 IPR001650 -
Lele21g0048 613 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 125 549 - -
Lele21g0048 613 CDD SF2_C_DEAD 383 519 - -
Lele21g0048 613 FunFam ATP-dependent RNA helicase RhlB 374 553 - -
Lele21g0048 613 MobiDBLite consensus disorder prediction 103 117 - -
Lele21g0048 613 Gene3D - 112 373 IPR027417 -
Lele21g0048 613 Gene3D - 374 553 IPR027417 -
Lele21g0048 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Lele21g0048 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 549 IPR001650 -
Lele21g0048 613 CDD DEADc_DDX3_DDX4 156 377 IPR044763 GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0048 Lele-ChrLele21 343570 347878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0048 153 542 Eukaryotic Initiation Factors Gene Family AT3G19760 32.481 4.53e-62 209