Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele20g1425 | ATGAAGTTTGAAGGCTCAGTCAATCGAGGAAGAAGATCCAGAAAGAAGCCAAGATTGGTGGAGGAAATGGCAATCCCTTCGACTGAGGCAGTGGATGTTGATGCTTTCATCTGGAATAAGGGCACAAGCAAATTCAATGCCATCTCAGTCGAGCAGTACCCCCACGATCGAGACCTCCACCTCTCGAGTATGGCTTCTCTAGGTAGAGCAACGCCTGCAGCGAAAACCTTCATCGACCTCTCCGACGGCGATGACGATGACGAGGTGAGAATTCTTAGGTTTGAGCCTAAAACCACGCCTTTCGGGAAACGTAGGAGGAAGTCGGGGTTTGAAACAGGGGAATCTTCCAATTGTCCGCCATTTGTTTGCGAAATCTGTGCTGATACCAAGACTGCAAACGAGTCGTTTAACATCAGTGGTTGCTCTCACGCTTATTGTGTAGGCTGTGTGATTAGGTATGTGGGAACGAAGCTACAAGAAAATGTTGTGAACATTAGATGTCCGGTGCCAGAGTGTGGAGGACTGTTGGAGCCTGAGGATTGCCGCGGGATCCTTCCTCCGGAAGTGTACGATCGGTGGGGTAACGCATTGTGTGAGGCCGTGATACTGGCGGAGGAGAAGTTCTACTGCCCATATAAGGACTGTTCTGCGCTGATGATTGATGATGGAGGACAAGGGAGTATCAGAGAGTCGGAGTGTCCCAACTGCAGGAGACTGTTCTGTGCGCAGTGTAAGGTGCCTTGGCATTCAGGAATTGATTGCCCTGAGTTTCAGAAATTGGGCAAGGACGAGAGAGAGAAGGAAGATATTATGCTGATGCAACTTGCTGGGAAGCATAAGTGGAGGAGGTGCCCCCAGTGTAGGTTCTACGTGGAGAAGTCTTCTGGCTGTCTCTATATGAAATGCAGGTGTGGAATTGCCTTCTGCTATAACTGCGGAACTATTTCAAGAGATAATTCCCATTATTGCTATAACTACGAACTTTTATCTTCATCAATTGGCAGAACTAAAGCTAAGCTTCAGTTCCGGCAGTCTCTACTCGTTTCCTGCGATCTGAGTTCTGAGACGAGTGAGTCCTAA | 1080 | 0.4843 | MKFEGSVNRGRRSRKKPRLVEEMAIPSTEAVDVDAFIWNKGTSKFNAISVEQYPHDRDLHLSSMASLGRATPAAKTFIDLSDGDDDDEVRILRFEPKTTPFGKRRRKSGFETGESSNCPPFVCEICADTKTANESFNISGCSHAYCVGCVIRYVGTKLQENVVNIRCPVPECGGLLEPEDCRGILPPEVYDRWGNALCEAVILAEEKFYCPYKDCSALMIDDGGQGSIRESECPNCRRLFCAQCKVPWHSGIDCPEFQKLGKDEREKEDIMLMQLAGKHKWRRCPQCRFYVEKSSGCLYMKCRCGIAFCYNCGTISRDNSHYCYNYELLSSSIGRTKAKLQFRQSLLVSCDLSSETSES | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele20g1425 | 359 | ProSitePatterns | Zinc finger RING-type signature. | 141 | 150 | IPR017907 | - | |
| Lele20g1425 | 359 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 79 | 325 | IPR031127 | GO:0004842|GO:0016567 | |
| Lele20g1425 | 359 | SMART | ibrneu5 | 191 | 254 | IPR002867 | - | |
| Lele20g1425 | 359 | SMART | ibrneu5 | 264 | 323 | IPR002867 | - | |
| Lele20g1425 | 359 | ProSiteProfiles | TRIAD supradomain profile. | 119 | 327 | IPR044066 | - | |
| Lele20g1425 | 359 | Pfam | IBR domain, a half RING-finger domain | 201 | 254 | IPR002867 | - | |
| Lele20g1425 | 359 | SUPERFAMILY | RING/U-box | 265 | 328 | - | - | |
| Lele20g1425 | 359 | SUPERFAMILY | RING/U-box | 198 | 259 | - | - | |
| Lele20g1425 | 359 | FunFam | RBR-type E3 ubiquitin transferase | 119 | 204 | - | - | |
| Lele20g1425 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 203 | IPR013083 | - | |
| Lele20g1425 | 359 | SUPERFAMILY | RING/U-box | 120 | 200 | - | - | |
| Lele20g1425 | 359 | ProSiteProfiles | Zinc finger RING-type profile. | 123 | 171 | IPR001841 | - | |
| Lele20g1425 | 359 | Gene3D | - | 251 | 346 | - | - | |
| Lele20g1425 | 359 | FunFam | RBR-type E3 ubiquitin transferase | 256 | 327 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele20g1425 | Lele-ChrLele20 | 18272570 | 18278652 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele20g1425 | 123 | 314 | C3H Transcription Factor Family | AT2G19610 | 30.348 | 8.76e-25 | 102 |