LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele20g1421	ATGGCTCTCTCTTCCTTTTCCATCCCCACCCTCTCTCTCTTCTTCATCTCTCTCTTCATTCTCCCTCTCTCTCCTGCTTCTTCCCTCCCGCTTGTCCCCTCCCAGTGCCTCAAGGTTTCCTCCTCCCAGTTCGTCTCCTCCGTCTCTCAGGTCCTCCAAGTTTTGAACCAGGTCGTTTCCGTCTTGTCCCGCTTCGCCGATTTCTCCGGTGATTCCCGCCTCTCCCATGCAATTTCCGACTGCCTCGATTTGCTCGATTCCTCTTCCGACGACCTTTCCTCCTCCGCTTCTGCTTCTCAATCTCCCCAGGGCAAGCATAACGGTACCGGAAACCTGAGCGCCGATTTGAGGACGTGGTTGAGCGCCGCACTGGCGAATCCGGAGACATGTAAGGACGGTTTTGAAGGCACCAACAGCATTGTGAGCGATCTCATATCCGCTGGGCTGGGACAGGTGACCTCCTTGGTGCAGGAGCTGCTGGCCCAGGTGCACCCTGTTTCAGACCAATCCTCCGGCACCAACAGCCGCTTTCCTTCGTGGATTAAACCCGGCGATCGCAAGCTCCTGCAAGCCGGTGGGGTGCCGGTAGACGCGGTGGTGGCTGCAGATGGGACTGGAAATTACACGAAGGTGATGGATGCAGTGCTTGCGGCTCCTGACTATAGTATGAAACGCTATGTCATATACGTAAAGAGGGGTGTTTACACCGAGAACGTGGAGATCAAAAAGAAGAAGTGGAACCTCATGATGATTGGTGACGGGATGGACGCCACCGTTATCTCCGGCAACCGTAGTTTCGTCGGTGGCTTTACCACCTTCCGCACCGCTACATTTGCTGTCAGCGGCAGAGGGTTCATAGCGCGAGACGTAGCGTTCCAGAACACTGCGGGCCCCGAGATGCACCAAGCAGTGGCGCTGAGATCCGACTCCGACCTCTCTGTGTTCTACCGATGTGGCATTTATGGATACCAAGACAGCCTCTACACCCACACCATGCGCCAATTCTTCAGAGAATGCAAGATCGCTGGCACGGTGGACTTCATATTCGGCGACGCCACCGCCGTGTTCCAGAACTGCCAGCTGCTGGCAAAGAAGGGCCTGCCAAACCAGAAGAACACCATCACGGCTCAAGGGCGAAAAGACCCCAACGAGCCCACAGGTTTCTCGTTCCAGTTCTGCAACGTGACGGCAGATTCGGGCTTGGTCGCCTCAATGAACAGCACGCAGACGTACCTGGGAAGGCCGTGGAAGACGTACTCGAGAACGGTGTTCATGCAATCGTACATGAGTGAAGTGCTGAGGCCAGAAGGGTGGCTGGAGTGGAACGGGGAGTTCGCGTTGGAGACGCTGTACTACGCGGAGTACCAGAACTACGGAGCAGGAGCGGCGCTGGAGAAGAGAGTGAAATGGGGAGGGTACAGAGCGCTGAATGATTCGAGGCAGGCCAGTAACTTCACTGTGACTCAGTTTATAGAGGGCAATCTTTGGTTACCTTCAACAGGCGTCACTTACACCGCCGACTTAGGTGTTTGA	1533	0.5571	MALSSFSIPTLSLFFISLFILPLSPASSLPLVPSQCLKVSSSQFVSSVSQVLQVLNQVVSVLSRFADFSGDSRLSHAISDCLDLLDSSSDDLSSSASASQSPQGKHNGTGNLSADLRTWLSAALANPETCKDGFEGTNSIVSDLISAGLGQVTSLVQELLAQVHPVSDQSSGTNSRFPSWIKPGDRKLLQAGGVPVDAVVAADGTGNYTKVMDAVLAAPDYSMKRYVIYVKRGVYTENVEIKKKKWNLMMIGDGMDATVISGNRSFVGGFTTFRTATFAVSGRGFIARDVAFQNTAGPEMHQAVALRSDSDLSVFYRCGIYGYQDSLYTHTMRQFFRECKIAGTVDFIFGDATAVFQNCQLLAKKGLPNQKNTITAQGRKDPNEPTGFSFQFCNVTADSGLVASMNSTQTYLGRPWKTYSRTVFMQSYMSEVLRPEGWLEWNGEFALETLYYAEYQNYGAGAALEKRVKWGGYRALNDSRQASNFTVTQFIEGNLWLPSTGVTYTADLGV	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele20g1421	510	Pfam	Plant invertase/pectin methylesterase inhibitor	53	142	IPR006501	GO:0004857
	Lele20g1421	510	PANTHER	PECTINESTERASE	33	498	-	-
	Lele20g1421	510	SUPERFAMILY	Pectin lyase-like	195	506	IPR011050	-
	Lele20g1421	510	FunFam	Pectinesterase	192	508	-	-
	Lele20g1421	510	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	47	145	IPR006501	GO:0004857
	Lele20g1421	510	Gene3D	-	194	508	IPR012334	-
	Lele20g1421	510	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	46	156	IPR035513	-
	Lele20g1421	510	CDD	PMEI-like_4	10	167	-	-
	Lele20g1421	510	Pfam	Pectinesterase	197	494	IPR000070	GO:0030599\|GO:0042545
	Lele20g1421	510	ProSitePatterns	Pectinesterase signature 2.	341	350	IPR033131	-
	Lele20g1421	510	SMART	PMEI_2	27	162	IPR006501	GO:0004857
	Lele20g1421	510	Gene3D	Invertase/pectin methylesterase inhibitor family protein	32	165	IPR035513	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele20g1421	Lele-ChrLele20	18252629	18255059	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele20g1421	12	508	Carbohydrate Esterase	AT3G43270	62.863	0.0	691