Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1417 ATGGGATTCTGTGTAGAGGAATCAATCTCAGGTTTGACATTAGGCCAGGCCATATATGAGGCTGCTCTAATAATTGCAGTTCTGAGATGGGTGTTTTGCTGGGTTTCCAAAGTCATCAATGATCGGCGGAGCCAGGCCTCATCAGAAGACTCTTCTTCATGGGTGTGCTGCCAGATGATAAGAGAAAGTACTCTGACACTAAGGACCTTTGGTGAAATGGTGGAAAGAGTGCCAGAAACGGAGGATATGTGTGCCGTTTGCTTGAACCAGTTAACAAAGGAGGATGAGGTTAGAGAGCTAATGAATTGTGACCATGCATTTCATAGGGAATGCATAGACAGATGGTTGGATCATGATCATGGCAATCTCAACCCCACTTGCCCGCTCTGCAGAGCTCCCTTGCTTACTTGCTATTCTTCATCTGATTCAGAATGCTCTGGTTGTATGCCACCCTCTCACCCTAGCTGGGCTGTGGAGAGGCTTCTCTATCTCTTTGGGGACGATCTTCCCCTTTGCTGA 519 0.4721 MGFCVEESISGLTLGQAIYEAALIIAVLRWVFCWVSKVINDRRSQASSEDSSSWVCCQMIRESTLTLRTFGEMVERVPETEDMCAVCLNQLTKEDEVRELMNCDHAFHRECIDRWLDHDHGNLNPTCPLCRAPLLTCYSSSDSECSGCMPPSHPSWAVERLLYLFGDDLPLC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1417 172 SMART ring_2 84 130 IPR001841 -
Lele20g1417 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 135 IPR013083 -
Lele20g1417 172 SUPERFAMILY RING/U-box 79 137 - -
Lele20g1417 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 29 168 - -
Lele20g1417 172 Pfam Ring finger domain 82 131 IPR001841 -
Lele20g1417 172 ProSiteProfiles Zinc finger RING-type profile. 84 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1417 Lele-ChrLele20 18229289 18229807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1417 1 169 C3H Transcription Factor Family AT5G20885 47.222 5.21e-42 137