Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1404 ATGCAGCATGTGCAGAGGCCCATGAAAGGCCCATTTGGGTCTGACAAGATAACAGTGGAAAGATTCCGGATTTTAAGGCATGGGTTCATACATACAAACATTCCACGAGAAAAACGATGCTTGCTCGATGAATACACATACATATGTCGTACATATGCGCACCAGATTGGGTGGTGTAAAGCAACCTACTGTACTTATTGGGTGTGGAGGAGCTTTGGAAAACAAATGCACTTGAAAAAGGCTGGTTCATTGAGGCACGACTTCAAATCCTTCGGCTACGTACGTGATCAACAACTTCCTTCCTTCATAAACAGCCTTGACGGGTGGTTAGGAGAAGGGATGTTGAAAATGGAGCCTCAGGCCGCCAAAGATGGAACGTCGTTCCTGAAATGGCCATGGATGAAACCTTCAATCTTGCGGTCATGTTATGATCCTTCAAGAAAGGCTTGGCTTGATTGTGATTGCGCCATTAGGCTCGTCGACAGGCGTAAAGAAATGAAGGTTCTCGTTATATTTGACATCAGCAAAATGGCATCAGATCTAAATTCAGGACTGTCCAAGAAAACATTTGTTTTTGGTTTGAAATTGTGGGTGTTAGTGGGGATAACGGTTGGTTTGTTCATTGTGATCATTCTTGTGGTGTTAATATGTCTTACTTCACGAAAGAGATCCAAACGTGTCAATGGCAAGGTTCCCTTTAGCCATATGTTATCAAATTCGGAAGAGATCAAAGAGATTAGAGTTGATCAAGTTTCAGCTGATAACCATTTGCACAATGGTGCTTTTGTAAGTCTGAATGACAAATTTAGTGACAGGGATTCTGAGAAGGTTTTGATCCAAACAAAAAATGGGGACACTAGCAGTCAATCAGGTTCATTTATTCAGATGGAGAAACATGCTCCTGGTTCTCAATCTGGTGAAGAAAGCGGTGCTATGGCCATGTCTGCTTACAGGTCATCTTTGCATCCTATAGCTGCGCCATCACCATTGTCTGGTCTGCCTGAACTCTCTCACCTTGGCTGGGGGTACTGGTTTACATTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCAAGAGACAATGTTATTGGTGAAGGTGGATATGGAGTTGTTTATCGTGGTCAGCTAATTAATGGGAATCCAGTGGCTGTTAAGAAGCTACTGAACAATTTAGGGCAATCTGAAAAGGAATTTAGAGTGGAGGTTGAGGCTATTGGTCATGTGCGCCATAAAAACTTGGTTCGACTTCTGGGTTATTGCATTGAAGGGACTCACAGGTTGCTGGTATATGAATACGTCAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCCATGCGTCAATATGGGTATCTAACTTGGGATGCACGAATGAAAGTTCTGCTTGGCACTGCTAAAGCGCTGGCTTACTTGCATGAAGCAATTGAACCTAAAGTGGTGCACCGGGACATTAAGTCAAGCAATATTCTAATTGATGATGACTTCAATGCCAAACTATCTGACTTTGGGCTCGCTAAGTTGCTTGGCGCTGGGAAAAGTCATATTGCTACTAGAGTAATGGGTACTTTTGGATATGTGGCTCCGGAATATGCCAACTCTGGCTTACTAAATGAGAAGAGTGATGTCTATAGCTTTGGGGTATTGCTTCTTGAATCAATTACTGGTAGGGACCCGGTGGATTATGGTCGACCAGCAGCTGAGGTGAATTTGGTAGATTGGCTCAAGATGATGGTAGGGAGTAGGCGTTCAGAAGAGGTGGTGGACCCCAAAATTGACACCAGGCCATCAACAAGTGCCCTTAAACGAGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCCGATGCTGAGAAAAGACCAACGATGAGTCAAGTCGTCCGTATGCTCGAATCGGAGGAATATCCCATACCAAGAGAGGATCGAAGACGCCGAAGAAGTCAGGCAGGAAACCTAGAGGGGCAGGTCGAGAGGGAGACTTCTGATACAGAAAAGAGCGACAATCCAGATTATAAGCCCAATGGCAGAATGAAGCAACAGAGTTAG 2040 0.4417 MQHVQRPMKGPFGSDKITVERFRILRHGFIHTNIPREKRCLLDEYTYICRTYAHQIGWCKATYCTYWVWRSFGKQMHLKKAGSLRHDFKSFGYVRDQQLPSFINSLDGWLGEGMLKMEPQAAKDGTSFLKWPWMKPSILRSCYDPSRKAWLDCDCAIRLVDRRKEMKVLVIFDISKMASDLNSGLSKKTFVFGLKLWVLVGITVGLFIVIILVVLICLTSRKRSKRVNGKVPFSHMLSNSEEIKEIRVDQVSADNHLHNGAFVSLNDKFSDRDSEKVLIQTKNGDTSSQSGSFIQMEKHAPGSQSGEESGAMAMSAYRSSLHPIAAPSPLSGLPELSHLGWGYWFTLRDLELATNRFSRDNVIGEGGYGVVYRGQLINGNPVAVKKLLNNLGQSEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGYLTWDARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKLSDFGLAKLLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLESITGRDPVDYGRPAAEVNLVDWLKMMVGSRRSEEVVDPKIDTRPSTSALKRALLTALRCVDPDAEKRPTMSQVVRMLESEEYPIPREDRRRRRSQAGNLEGQVERETSDTEKSDNPDYKPNGRMKQQS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1404 679 SUPERFAMILY Protein kinase-like (PK-like) 341 635 IPR011009 -
Lele20g1404 679 ProSitePatterns Protein kinases ATP-binding region signature. 363 386 IPR017441 GO:0005524
Lele20g1404 679 PANTHER OS01G0323000 PROTEIN 180 656 - -
Lele20g1404 679 Gene3D Transferase(Phosphotransferase) domain 1 433 644 - -
Lele20g1404 679 FunFam Putative receptor-like serine/threonine-protein kinase 433 644 - -
Lele20g1404 679 Pfam Protein kinase domain 358 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1404 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Lele20g1404 679 Gene3D Phosphorylase Kinase; domain 1 340 432 - -
Lele20g1404 679 CDD STKc_IRAK 363 629 - -
Lele20g1404 679 MobiDBLite consensus disorder prediction 631 679 - -
Lele20g1404 679 MobiDBLite consensus disorder prediction 631 670 - -
Lele20g1404 679 ProSiteProfiles Protein kinase domain profile. 357 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1404 679 SMART serkin_6 357 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1404 679 FunFam Putative receptor-like protein kinase 339 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1404 Lele-ChrLele20 18166324 18172903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1404 193 631 Trihelix Transcription Factor Family AT1G70460 38.739 2.02e-89 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lele20g1404 Pkinase 2.6e-48 CL0016