Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1403 ATGGGCTTCTTTAGCTGTTGCAAGAAAGGTGATGATCATCATGCTGCTGATAATGGACCCTTCGTGCCAAAGCCAAACTATTCCCCCGGGATCACTGGTGGTTATACTGGTAGACAATTTTCAACGACCACCACTCCAAAAACTGTTAATGTTCAACCCGTTGCCGTCCCATCCACTTCAGTCGATGAAATGAAGTCTCTGACTGATAATTTTGGCACAAAATCTTACATTGGCGAGGGGGCTTACGGTAAGGTATATCGTGGTGTATTAAAAAATGGGCGTCACGTGGCGATTAAGAAGTTAGATCCTACCCAGCAACCAGAAAAAGAATTTCTTGCTCAGGTCTCAATCGTATCGAGGCTAAAGCATGAGAATGTTGTTGAGCTTCTTGGTTATTGTGTTGATGGTGCTTTGCGGGCCCTAGCCTATGAGTATGCTCCTAAAGGAACTCTTCATGATATTCTACACGGTGTGAAGGGTGCACAACCTGGTCCAGTATTGTCATGGCCACAAAGAGTTAAAATTGCAGTGGGGGCAGCTAGAGGAGTAGAATATCTACATGAAAACGCAGAGACTCCTATCATCCACCGTTATATCAAGTCTTGCAACATACTGCTTTTCGAAGATGATGTTGCCAAGATTTCTGATTTTGATCTGTCAAATCAAGCCCCTGATGCCGCTGCTCTTCTCCATTCTACCCGTGTTCTTGGAACCTTCGGTTATCATGCTCCAGAATATGCCATGACGGGTCAACTCACTTTGAAAAGTGATGTCTACAGTTTTGGAGTTATACTTCTAGAGCTCTTAACCGGACGCAAACCTGTTGATCATACACTGCCGCGAGGGCAGCAGAGCCTTGTCACCTGGGCAACGCCAAAACTGAGTGAAGACAAGGTGAAGCAGTGCGTGGATGTGAAATTAAAGGGAGAATACCCTCCAAAGGCAGTTGCAAAGATGGCTGCTGTGGCTGCAGTGTGTGTGCAATATGAAGCAGAGTTTCGGCCAAATATGAGCATTGTTGTGAAAGCTCTACAGCCTCTACTCAATCCTCGCCCTTCCGTTCACACAAAGCATTAG 1077 0.4568 MGFFSCCKKGDDHHAADNGPFVPKPNYSPGITGGYTGRQFSTTTTPKTVNVQPVAVPSTSVDEMKSLTDNFGTKSYIGEGAYGKVYRGVLKNGRHVAIKKLDPTQQPEKEFLAQVSIVSRLKHENVVELLGYCVDGALRALAYEYAPKGTLHDILHGVKGAQPGPVLSWPQRVKIAVGAARGVEYLHENAETPIIHRYIKSCNILLFEDDVAKISDFDLSNQAPDAAALLHSTRVLGTFGYHAPEYAMTGQLTLKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVKLKGEYPPKAVAKMAAVAAVCVQYEAEFRPNMSIVVKALQPLLNPRPSVHTKH 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1403 358 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1403 358 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Lele20g1403 358 Gene3D Transferase(Phosphotransferase) domain 1 147 355 - -
Lele20g1403 358 CDD STKc_IRAK 77 347 - -
Lele20g1403 358 SUPERFAMILY Protein kinase-like (PK-like) 48 344 IPR011009 -
Lele20g1403 358 Gene3D Phosphorylase Kinase; domain 1 35 145 - -
Lele20g1403 358 PIRSF ILK 34 352 - -
Lele20g1403 358 Pfam Protein tyrosine and serine/threonine kinase 75 344 IPR001245 GO:0004672|GO:0006468
Lele20g1403 358 FunFam pto-interacting protein 1 147 355 - -
Lele20g1403 358 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1403 Lele-ChrLele20 18162346 18164131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1403 63 353 Receptor kinase-like Gene Family AT3G58690 49.492 7.23e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lele20g1403 PK_Tyr_Ser-Thr 4.3e-47 CL0016