Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1389 ATGGATGTCAAAGGAAGAGGAAGCACCGCGCTCACTCTCCAAGCCGACGTCGTCGACGACCTCGACCTCCGACGAGGTCCTTGGACCGTCGACGAGGACCTCACGCTCATCAACTACATCACCACTCAAGGCGAAGGTCGCTGGAACTCCCTCGCTCGCTCAGCCGGTAAATTCAAACTTCTATTCGTGTTCTTTAATTTTATATGGCTTTTCAACAATCCCGCCCCACTTCTAAATTTCTTCGGCTCTTCTGCTTTTCGTTTCATTCGAAAACCTTCATCACTTGTTTCGTTCAATAATCTCCACTTGCGTTCTTTTCCTCACAACCAATCCATCTTGTTCGGATTGAGGTGGCTCAACTATCTCCGTCCCGATGTTCGACGCGGAAATATCACACTCGAAGAACAGCTCATGATTCTCGAACTTCATTCTCGCTGGGGAAACAGGTGGTCCAAGATAGCCCAGTATTTGCCGGGAAGAACCGACAATGAGATCAAGAATTACTGGAGAACCCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCGAGGCTGGTGGAGCGAATTAAAGCAGCTGCAGCCACGGCCGCCACAGCCACGACAACGGCGAGTTCTATGACATTATCTGCCGCCACAACCGTCCCCACAAATTCCACATACAATCATTACAATAATAATATGGAAGTTGAGAATGGGAACATGCTGATGAACCAGGCCATGATGAATAATAATGGCTTTGGAGGCTCCCAGGTCACTCAGAGCTACACGCCGGAAAACAGCAGCACAGGCGCTTCATCGGACTCGTTCGGGACACAGGTTTCGCCGGTGTCGGAATTGACTGATTATTACAGCACCGTCCCTAATCAGGATTATTATCAACCCTCTCAGATCAGCTACTCCGATTGCATCACCAGCCCATCTGGGTTATACCCTCAAGGATTGGATTATTCCCAGTTGATGGAGCCAAGCAACCCGTGGATTCAGGACGGGGACACGTTGGACAATTTGTGGAATGTTGAGAATATGGTGTTTTTACAGCAGCAGCTCAATGTGGACAGCATGTAA 1113 0.4888 MDVKGRGSTALTLQADVVDDLDLRRGPWTVDEDLTLINYITTQGEGRWNSLARSAGKFKLLFVFFNFIWLFNNPAPLLNFFGSSAFRFIRKPSSLVSFNNLHLRSFPHNQSILFGLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIKAAAATAATATTTASSMTLSAATTVPTNSTYNHYNNNMEVENGNMLMNQAMMNNNGFGGSQVTQSYTPENSSTGASSDSFGTQVSPVSELTDYYSTVPNQDYYQPSQISYSDCITSPSGLYPQGLDYSQLMEPSNPWIQDGDTLDNLWNVENMVFLQQQLNVDSM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1389 370 CDD SANT 27 57 IPR001005 -
Lele20g1389 370 ProSiteProfiles Myb-like domain profile. 123 173 IPR001005 -
Lele20g1389 370 Pfam Myb-like DNA-binding domain 128 171 IPR001005 -
Lele20g1389 370 ProSiteProfiles Myb-like domain profile. 20 53 IPR001005 -
Lele20g1389 370 MobiDBLite consensus disorder prediction 263 288 - -
Lele20g1389 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 177 IPR017930 -
Lele20g1389 370 Gene3D - 132 195 - -
Lele20g1389 370 CDD SANT 132 171 IPR001005 -
Lele20g1389 370 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 253 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele20g1389 370 SUPERFAMILY Homeodomain-like 117 181 IPR009057 -
Lele20g1389 370 Gene3D - 22 128 - -
Lele20g1389 370 FunFam MYB transcription factor 132 195 - -
Lele20g1389 370 SUPERFAMILY Homeodomain-like 20 56 IPR009057 -
Lele20g1389 370 SMART sant 24 64 IPR001005 -
Lele20g1389 370 SMART sant 127 175 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1389 Lele-ChrLele20 18074035 18075653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1389 1 355 MYB Transcription Factor Family AT3G06490 46.774 2.86e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele20g1389 Myb_DNA-binding 1e-13 CL0123