Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1372 ATGGCCATGGACGTCCAATTGCATTCTTATGCCCCCTTCCTTCCATGCATAGTACTTGCCATCACCTTCTTCTCAGTAGAATCACACGGGCACGGCCAAGCCACCACTTACTCTGACTGTGATCAAACTTACAGTTGTGGGAACATCAGCAACATCGCTTACCCTTTCTGGGGAAAGAATCGACTCCATTATTGTGGCGGCGGCGATCAATTCAGGCTCACTTGCCAGAATAATAATACAACTCTGATCACGGTAGGCCGCCAGAATTTCACGGTGGTTTCCATTAACCCTGAATTTTACTCCATGAGATTGGTCCAAACTGCTCTCTCTGTTGCTTGTCCCTGGAATTTCATTAACACTTCCTTGGATCCTGCTCTGTTCCGCTTCGATAACTTGTCAGTTCAGAACTTGACTGTATTCTACAAGTGCCCTCCTCATGTTTCAAGCCCAAGCAACATCACTTGCAATGGTGGTGTTGCTATTTTCGCCAAGCAAGATGAGACGCGGAAATGGCAAAAATTTTCCGAATGTAAGGCCCATAATCAAATTCTAGTACAAGGTGAGATTTCGGAGGTCGAAGACAAGGATGGGCTGAACAAAACCTTAAGGAATGGGTTCGTTGTTCAATATGTTGCAAACTGGGATTCCTGCTCGGCATGCAATTCATCAGGAGGAATATGTGGCACCGACATCCACCATGCTTCTCGATTTGCCTGTCATTGCCGCAACGGAATTCGTCCTTATTCCTGTCCAAAAAAAAGACGTTGGAACTGGAAAGGGAAACTCATAGCAGCTGCTGCTGCTTCTTCATTCAGTGTGATAGTCATGAGCATTGGCTTTTACTTCTATCTGCGCCGAAAGAACAATCGTCATGCCAAATCAGACAAATATTCTCAGGGTCGGACCATATCTTCCGATTCCTCCATAAAGGATGCCGGGAAAGAAAGTAAATACTTCGGAGTCCACCTCTTCACATATACCGAACTTGAAGAGGCCACTAGCAAGTTTGATTCAGCCAATGAGCTTGGAGATGGGGGTTGTGGAACAGTTTATTGCGGAAAACTAGGGGATGGTCGTACAGTTGCAGTGAAGAGATTGTATGAAAACAATGACAGGAGAGTTGAGCAGTTCATGAATGAAGTGGAGATATTAACTCGTTTGCGCCACCAAAACCTTGTCCAGCTTTATGGCTGCACTTCTCGCCATAGCCGCGAACTTCTTCTTGTATATGAATACGTTCCTAATGGAACTGTAGCCGATCATATTCATGGCCAGAGAACAAAACCAGCGGACAAACTCCCATGGCATACCAGAATGAATATAGCCATAGAGACCGCAAGTGCATTGGCATATCTTCACGCGTCTGACATCATCCACCGTGATATAAAAACCACCAACATCCTTCTTGACAATAATTTCGTCGTCAAAGTAGCAGATTTTGGGCTTTCTCGTCTCTTCCCGCACGATGCCACTCACATTTCAACAGCCCCACAGGGAACTCCTGGATACGTGGATCCAGAGTACCATCAAAGCTACCAGCTTACTGACAAGAGTGATGTGTATAGCTTTGGAGTGGTGCTCATGGAGTTGATATCATCCATGCCTGCTATTGATATTACGAGGCATATGCATGAGATCAATTTGGCAACCATGGCTATTAACAAGATTCAAAATGGGGCTTTGCATGAGCTTGTGGACCCAACTCTTGTTTTTGAAGAAGATCCCAAGGTGAGGAAGATGATAAATGGAGTGGCAGAGTTGGCTTTCCAGTGCTTGCAGTGTATGAAAGATACGAGGCCTTGCATGCAAGAGGTGGTGGAGAGGCTGAAGGAAATAGAGAGTGATGGGATAGGCAAAACGAAAGCAGAGGAGATGGATATGTCAGCAGATCATATCGTGTTGCTGAAGAATGAAGTGCCTCCACTATCACCCGATTCAAATATGAGGAGCACCGGGACGACTCCGAATGCCAGCGGATGA 1980 0.4576 MAMDVQLHSYAPFLPCIVLAITFFSVESHGHGQATTYSDCDQTYSCGNISNIAYPFWGKNRLHYCGGGDQFRLTCQNNNTTLITVGRQNFTVVSINPEFYSMRLVQTALSVACPWNFINTSLDPALFRFDNLSVQNLTVFYKCPPHVSSPSNITCNGGVAIFAKQDETRKWQKFSECKAHNQILVQGEISEVEDKDGLNKTLRNGFVVQYVANWDSCSACNSSGGICGTDIHHASRFACHCRNGIRPYSCPKKRRWNWKGKLIAAAAASSFSVIVMSIGFYFYLRRKNNRHAKSDKYSQGRTISSDSSIKDAGKESKYFGVHLFTYTELEEATSKFDSANELGDGGCGTVYCGKLGDGRTVAVKRLYENNDRRVEQFMNEVEILTRLRHQNLVQLYGCTSRHSRELLLVYEYVPNGTVADHIHGQRTKPADKLPWHTRMNIAIETASALAYLHASDIIHRDIKTTNILLDNNFVVKVADFGLSRLFPHDATHISTAPQGTPGYVDPEYHQSYQLTDKSDVYSFGVVLMELISSMPAIDITRHMHEINLATMAINKIQNGALHELVDPTLVFEEDPKVRKMINGVAELAFQCLQCMKDTRPCMQEVVERLKEIESDGIGKTKAEEMDMSADHIVLLKNEVPPLSPDSNMRSTGTTPNASG 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1372 659 Pfam Wall-associated receptor kinase galacturonan-binding 40 105 IPR025287 GO:0030247
Lele20g1372 659 FunFam Wall-associated receptor kinase-like 20 413 622 - -
Lele20g1372 659 ProSiteProfiles Protein kinase domain profile. 336 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1372 659 Gene3D Transferase(Phosphotransferase) domain 1 413 633 - -
Lele20g1372 659 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 656 IPR044652 GO:0004672
Lele20g1372 659 Gene3D Phosphorylase Kinase; domain 1 307 412 - -
Lele20g1372 659 SMART serkin_6 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1372 659 Pfam Protein kinase domain 338 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1372 659 SUPERFAMILY Protein kinase-like (PK-like) 315 609 IPR011009 -
Lele20g1372 659 CDD STKc_IRAK 342 612 - -
Lele20g1372 659 MobiDBLite consensus disorder prediction 643 659 - -
Lele20g1372 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Lele20g1372 659 Pfam Wall-associated receptor kinase C-terminal 168 243 IPR032872 -
Lele20g1372 659 MobiDBLite consensus disorder prediction 639 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1372 Lele-ChrLele20 17987476 17990870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1372 263 659 Receptor kinase-like Gene Family AT1G25390 55.825 1.22e-143 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lele20g1372 Pkinase 2.1e-48 CL0016