Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1331 ATGGTAGCTGCCGTCGAAGTCGGTAACAGTAATTCAGGAAAAGACTCCAATAGCGGCACGACTGAGATTTCAACGTCTCAGAGGAACGTCGACACGCTTTGCCTCTCCGCACAATACCAAGAAACCTGCAAGAAGAGCGTCGAGAGTGTGGCGTCCGACAATAACGCCGACATGAAGACCCTCATCAAAGCCGCCTTTAACTCCACGGCGGAAGAGATCACCAGTCAGATGAGAAGCTCCATGCTGTTCCAAGAGCTGGAGAAGGACCCCAACACGAAAGACGCCTTGGCCGTGTGCAAGGAGGTGTTTGGTTACGCGTTGAAGAGCATCAATGACTCCATCGATAAGGTGGATAAGTTCGAACTGAGCAATCTGGGCGAATTCGCCTACGACCTCAAGGTGTGGCTGTCAGGAGCCATAACCATGCAGCACACCTGCTTGGATGGCTTTGATAACTCCACCACCGAGGCTGGCCAGACCATGGCTCATGCATTGAAGACGGCGTTGGAGATGAGTAACAACGCGCTGGATATAGTCGAAGGATTCTCCAGCGTCATAGAGGATTTCAACTTGGACACGCACTGGATGATGTTGAGAACACGGATAATGTTAGAAACAAGAGCAGGAAGCTGCTGGTTGAAGGCGGACGCTGTGGTTGCACAGGACGGGACTGGCCAGTTCAAGACATTGATGGACGCACTCAACACAGTTCCCCCAACCAACAACAAGCCCTTTGTCATATACGTCAAGGCTGGGGTGTACAAGGAGGAAGTAACCGTAGCCGCAAACACCATGAACTTTGTGATTATCGTCGGAGATGGCGCCACGAAGGCCAGGTTCACGAGAGGCAAATCCCAAAAGGATGGCGTCACAACTTACCACACCTCATCTTTCTCGGTGAATGCCCATAACTTCATGGCAATAAACGTAGGGTTGGAGAACACGGTGGGACCTAGCGCGGGGCCGGCGGTGGTGCTAAGGATAACAGGAGACAAGGCAGTAGTATACAGGTGCTACGTGGACGGACACCAAAACACACTGTATCCGAGTGCGTACAGGCAACTACAGGGACTGCATGGTGTGGGGGACCATCGACTTCAAATTCGGGGATGCAGTGACGGTATTCCAGAAATGCACAATAACGGTGAAGAGGGGTGTAGATGGGCTGGAAGGCGTGGTGGCAGCCGGTGGGAAAAGCCAGCAGGCAGGTCCAAGTGCTCTGGTGTTCCAGTGCTGCAGATTCCTTCCGGACCCATCCTACATGGATGCCGCCGCGGTGAAGAACGGGTTGAAGATATCGTATCTGGCAAGGCCATGGAAGCCGTACGCAAAGACGGTGATCATAGAGTCGTACGTATATCCATGAAATCTTCAATCTAA 1380 0.5246 MVAAVEVGNSNSGKDSNSGTTEISTSQRNVDTLCLSAQYQETCKKSVESVASDNNADMKTLIKAAFNSTAEEITSQMRSSMLFQELEKDPNTKDALAVCKEVFGYALKSINDSIDKVDKFELSNLGEFAYDLKVWLSGAITMQHTCLDGFDNSTTEAGQTMAHALKTALEMSNNALDIVEGFSSVIEDFNLDTHWMMLRTRIMLETRAGSCWLKADAVVAQDGTGQFKTLMDALNTVPPTNNKPFVIYVKAGVYKEEVTVAANTMNFVIIVGDGATKARFTRGKSQKDGVTTYHTSSFSVNAHNFMAINVGLENTVGPSAGPAVVLRITGDKAVVYRCYVDGHQNTLYPSAYRQLQGLHGVGDHRLQIRGCSDGIPEMHNNGEEGCRWAGRRGGSRWEKPAGRSKCSGVPVLQIPSGPILHGCRRGEERVEDIVSGKAMEAVRKDGDHRVVRISMKSSI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1331 459 ProSitePatterns Pectinesterase signature 1. 241 260 IPR018040 -
Lele20g1331 459 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 182 IPR035513 -
Lele20g1331 459 SMART PMEI_2 25 178 IPR006501 GO:0004857
Lele20g1331 459 Pfam Pectinesterase 216 355 IPR000070 GO:0030599|GO:0042545
Lele20g1331 459 FunFam Pectinesterase 26 183 - -
Lele20g1331 459 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 182 IPR035513 -
Lele20g1331 459 MobiDBLite consensus disorder prediction 1 24 - -
Lele20g1331 459 CDD PMEI-like_3 32 184 - -
Lele20g1331 459 MobiDBLite consensus disorder prediction 9 24 - -
Lele20g1331 459 Pfam Plant invertase/pectin methylesterase inhibitor 30 178 IPR006501 GO:0004857
Lele20g1331 459 Gene3D - 211 360 IPR012334 -
Lele20g1331 459 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 179 IPR006501 GO:0004857
Lele20g1331 459 PANTHER PECTINESTERASE 29 355 - -
Lele20g1331 459 SUPERFAMILY Pectin lyase-like 212 354 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1331 Lele-ChrLele20 17782265 17783848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1331 1 355 Carbohydrate Esterase AT3G05610 37.772 2.03e-78 255