Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1294 ATGCTGGGAGAAGAGGGTAAGGACTTTTCCGCCGCCGCCGGCGGTCGGAGAACATATTCCCGTTCTGTTTCTTGGACTGATCGGTCTCCGACGAACATTAGTCAAAACCGTCGGCCACCCGCAAATAGTAAGCCCCGGCCATTATTGCCTCCTCTTCAGCCTCTCTCCATCATGAAACGGAGCGCCGAGGAGTGGCCTAGTGCGGGATCTGATGATCTTGGAATTTGGCCTCTTCCACAAACCCCAAGAGGGTCCGTCAAAGCCTTGGAGAGTTCCGATTCGGGTCAACCCACAAAAGAATTCCAGTTCAAGAGGGATAAATTAGCGTTTTTTGACAAGGAGTGTTCCAGAATCGCGGAGCATATATATCTGGGGAGTGATACAGTGGCGAAGAATCACGAGCTTTTGAGGCAAAACGGGATCACCCATGTGCTCAACTGTGTTGGGTTTGTTTGTCCTGAGTATTTCAAAAGCGATTTTGTGTACAAGACACTCTGGTTGCAGGACAGCCCCACCGAGGATATCACCAGCATCCTCTACGATGTATTTGATTACTTTGAGGATGTCCGAGAGCAAGGCGGGCGTGTACTTGTGCACTGTTGCCAGGGAGTTTCTCGATCATCCTCTCTGGTCATTGCATATCTCATGTGGAGAGAAGGTCAGAGTTTTGAAGATGCGTTTCAGTATGTGAAGACCGCACGAGGAGTGACCAACCCAAATATGGGTTTCGCTTGTCAACTTCTTCAGTGTCAGAAACGTGTACTTGCTATGCCCGCAAGTCCAAATTCCATTCGTAGGATGTACCGAATGGCCCCTCACTCGCCATATGATCCTCTTCATTTAGTCCCCAAAATGATAAACCATCCAGGAGCTCGAGCTCTTGATTCTCGTGGAGCTTTCATTATTCATGTTCCTTCTGCTATATATGTGTGGAGTGGAAAAAGTTGCAGCCCGGTGATGTCGTGTAACGCAAGGGCTGCGGCGTGTCAGGTCATCCGATACGAGAAGGCAAAGGGTCCAATTCAGAGCATCAAAGAAGGTGAAGAACCTCTGGAGTTTTGGATTGCTCTTGCCAACGAGCAAGTCTTATCAGGCCATGAAAGCGTGGAGGTTCCTGAAGCTGGTACTAGTATGGTGATTGGTGAGAGAAAAGTTAGTGAGTATGATTTGGATTTTGAAATTTTCCACAAGGCACTTGCCGGTGGGGTTGTTCCACCTTTTTCTGTTTCTAGTGCTGGATCGGAAACTTGCTTACCTGCTAGAGAAAACGATTGGAGTAGGCTGAGGAGGAATTTTGCTCGTGGTTTGATGAAAGGATTGTTCACATCATCCTGTAAATGGAACTGTGAAGTTATTACCAATGCCACCAAACCTGCAGACGAATGCTGTGTGATTATGCATGAAGGAAAACAAGATTCTGTAGTTGATCCTAATTTGTCACCAGCATCATCAACCGATCTCTGTGGTTCCCCTGATTCTTTTGAATGTTTTCCAGATAACCGCTCAGACATGGCGGCGAAGGATAGCACTGTTGATGTCATGGATCTCTCTGTTCCTCCAACTTCAGATTCTTTTTCTTGTTTTCTAAGAAACAGCCCAAAATTCAATTCCAAGTCCCCAACACTCTCGCCCTCCAGTTCTGACTATGCCAGTTCATTTACCTTTTCACCTTCATCTACAAATTGGTCTGACTTGTCACTTGTGTCTTCAAGGCAGCCATCACCTTCTAGCATCGAACCAAGTGATCCTTTTTATGCCAAAGATCTTTCTTTCGCAGAGAACTCCTTAATTCTCAAAGTTGTTTCGTCGCCTAAAGAGGAGCCATTTTGTGCTGATCACACAATGGGAGGAGTAAACACCTATTTGTTAAGTAAAGGGTCTTCCCCTTCCCTTGCAGAACGCAGAGGGAGCAATCTTCCACCTCGTATGTTTCTTCCCACTGTCAACGAATCATCTCACGATCACACCAACCTGGTAAGATCACATTCATTTTCGTTGCCTGACTTAGATGGTGATGTAATGGAGGATGTTAGCGTGAAGCAATCTGATCATGAAAACAACAATGGAAAAGGGCAAGGGCCTATAGAACATGCCGATATTAGTTCAGGCGGAGAATCGCAGAGTGAAAATAATGACAGTGATCATAATATGCGACTATGTTATGTGATATAATTGCGATATTTTCTTCTTAGACCGTTGTGCCAACTTAATAATGATGACATGAGACTCTACAACAGGAAACTGATGGTGGGGATGCATCAAATGGACCATGAGCATACACGAGAATATCAAAATCATTCTAAAACAGATGAACTTTTGCTGCTTGAGAAGCCACAAGAGGAGTTGGATCCTCTTATGCTTGTCTGTGATGACCCATGTAGATGGATACATGGATTGGGCGACTTTGATAGAAGTGCATTCAAAGACACCAGTTAA 2436 0.4544 MLGEEGKDFSAAAGGRRTYSRSVSWTDRSPTNISQNRRPPANSKPRPLLPPLQPLSIMKRSAEEWPSAGSDDLGIWPLPQTPRGSVKALESSDSGQPTKEFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSSSLVIAYLMWREGQSFEDAFQYVKTARGVTNPNMGFACQLLQCQKRVLAMPASPNSIRRMYRMAPHSPYDPLHLVPKMINHPGARALDSRGAFIIHVPSAIYVWSGKSCSPVMSCNARAAACQVIRYEKAKGPIQSIKEGEEPLEFWIALANEQVLSGHESVEVPEAGTSMVIGERKVSEYDLDFEIFHKALAGGVVPPFSVSSAGSETCLPARENDWSRLRRNFARGLMKGLFTSSCKWNCEVITNATKPADECCVIMHEGKQDSVVDPNLSPASSTDLCGSPDSFECFPDNRSDMAAKDSTVDVMDLSVPPTSDSFSCFLRNSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSLVSSRQPSPSSIEPSDPFYAKDLSFAENSLILKVVSSPKEEPFCADHTMGGVNTYLLSKGSSPSLAERRGSNLPPRMFLPTVNESSHDHTNLVRSHSFSLPDLDGDVMEDVSVKQSDHENNNGKGQGPIEHADISSGGESQSENNDSDHNMRLCYVIXLRYFLLRPLCQLNNDDMRLYNRKLMVGMHQMDHEHTREYQNHSKTDELLLLEKPQEELDPLMLVCDDPCRWIHGLGDFDRSAFKDTS 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1294 811 Gene3D Protein tyrosine phosphatase superfamily 88 255 IPR029021 -
Lele20g1294 811 Pfam Dual specificity phosphatase, catalytic domain 122 252 IPR000340 GO:0008138|GO:0016311
Lele20g1294 811 MobiDBLite consensus disorder prediction 1 96 - -
Lele20g1294 811 MobiDBLite consensus disorder prediction 649 663 - -
Lele20g1294 811 MobiDBLite consensus disorder prediction 17 41 - -
Lele20g1294 811 MobiDBLite consensus disorder prediction 624 713 - -
Lele20g1294 811 PANTHER MKPA PROTEIN 10 679 - -
Lele20g1294 811 SMART dsp_5 114 253 IPR020422 GO:0006470|GO:0008138
Lele20g1294 811 Gene3D Severin 267 363 IPR029006 -
Lele20g1294 811 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 256 IPR029021 -
Lele20g1294 811 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 234 IPR000387 GO:0016311|GO:0016791
Lele20g1294 811 CDD DSP 115 249 - -
Lele20g1294 811 SUPERFAMILY Actin depolymerizing proteins 260 359 - -
Lele20g1294 811 ProSitePatterns Tyrosine specific protein phosphatases active site. 198 208 IPR016130 GO:0016311|GO:0016791
Lele20g1294 811 ProSiteProfiles Dual specificity protein phosphatase domain profile. 114 256 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1294 Lele-ChrLele20 17591887 17594668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1294 1 150 Protein tyrosine phosphatase (PTP) family AT3G55270 43.548 2.10e-32 132