Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1279 ATGTTGGACGGGCTAGACGAAGAAGGATGTGGGGAAGAATTAGGCCACCCGCCGGAGAAGAAACGCCGTCTTACTGTGGATCAAGTGAAGGCTTTAGAGAAGAACTTCGAAGTAGATAACAAGCTTGAACCCGAGAGGAAGGTGAAGCTTGCCCAAGATCTGGGTTTGCAGCCCAGGCAAGTGGCCGTGTGGTTCCAAAATCGTCGAGCCAGATGGAAAACCAAGCAATTAGAGAGAGACTATGTCGTCCTCAAAGCCAATTATGATGCTCTCAAACTTAACTACGATTCCCTCCAACAGGACAATGAAGCCTTGCTCAAAGAGATTAAGGAACTGAAATCTAAATTGCAAGATCAAGAAAAGAGTGAAGATGTGTCGCTGAATGGAGAGATAAAGAAGCCTAAGTCGGAAGAGAAAGTGATGGGAGTGGGTGTGGAAACTCCTGACACGGTCATTCCGGGAATGGAGTCCGAAGACTTAAATTACGAGTGCCTCAACGGGAACGGCGTTGTAGGAGGTTGCTCACTCTTCCCGGCAGACTTTAACAAAGACGGTTCTTCCGACAGCGACTCGAGCGCTATCTTGAACGAGGATCCAAGCTCTTGTTCCTTCAAATTCAACTGTTCTTCATCGTCGTTTCAGTTCCAGAAAACGTGCCAGACTCAGACTCAATATGTGAAGATGGAAGAGCACAACTTCTTCAGCACGGATGAGGCCTGCAACTTCTTCTCCGTCGAACAGGCCCCAACCCTCCAGTGGTACGGGAGTTAA 771 0.4825 MLDGLDEEGCGEELGHPPEKKRRLTVDQVKALEKNFEVDNKLEPERKVKLAQDLGLQPRQVAVWFQNRRARWKTKQLERDYVVLKANYDALKLNYDSLQQDNEALLKEIKELKSKLQDQEKSEDVSLNGEIKKPKSEEKVMGVGVETPDTVIPGMESEDLNYECLNGNGVVGGCSLFPADFNKDGSSDSDSSAILNEDPSSCSFKFNCSSSSFQFQKTCQTQTQYVKMEEHNFFSTDEACNFFSVEQAPTLQWYGS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1279 256 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Lele20g1279 256 PRINTS Lambda-repressor HTH signature 46 55 IPR000047 GO:0003677
Lele20g1279 256 PRINTS Lambda-repressor HTH signature 55 71 IPR000047 GO:0003677
Lele20g1279 256 FunFam Homeobox-leucine zipper protein HAT5 13 77 - -
Lele20g1279 256 Pfam Homeobox associated leucine zipper 75 117 IPR003106 GO:0006355|GO:0043565
Lele20g1279 256 ProSitePatterns 'Homeobox' domain signature. 50 73 IPR017970 GO:0000981|GO:0006355
Lele20g1279 256 CDD homeodomain 20 76 IPR001356 GO:0003677
Lele20g1279 256 Gene3D - 14 80 - -
Lele20g1279 256 MobiDBLite consensus disorder prediction 1 20 - -
Lele20g1279 256 Pfam Homeodomain 20 73 IPR001356 GO:0003677
Lele20g1279 256 Coils Coil 74 122 - -
Lele20g1279 256 SUPERFAMILY Homeodomain-like 12 77 IPR009057 -
Lele20g1279 256 SMART HOX_1 18 79 IPR001356 GO:0003677
Lele20g1279 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 13 233 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1279 Lele-ChrLele20 17508404 17509262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1279 1 256 Homeobox Transcription Factor Family AT4G40060 47.794 2.79e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele20g1279 Homeodomain 4.6e-17 CL0123