Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1269 ATGGCCATTACATCTTTTGGAAGCATATCTGTTGCACAATGGGGAATCCGTCCTCAGTTATTTATGAGATCCTGTATGACAGGCAGGATCACATCATCTGGCTTCAGCGTTACAAGTAGGGTAAGCTTTATGGCTGCCCCAAGTTCAAGCTTTTTTGGTTCCGATTCCTTGCATGCGCTCTATGACCTGGGTTCTTCTCAAACTTTTCATAGTCGCAAGGGATCAAGGTTAATAGTTAGGGCAGATGCGGATTACTATGCTGTCCTTGGGGTGTCAAGAAATGCAAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGGAATTATCACCCAGATGTGAACAAAGAACCTGGCGCAGAACAGAAGTTTAAGGAAATTAGCAATGCATATGAGGTCTTATCAGATGATGAGAAAAGATCCATATATGACAGATACGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGCATGGGGGATTTCAGCAATCCTTTTGATCTGTTTGAGACTCTGTTTGAGGGTATGAATCGTGGATCCAGGGGTTCCTGGAATGGAGCTCTTGATGGTGAAGATGAGTATTATAGTCTTGTCTTGAACTTTAAGGAAGCAGTTTTTGGAGTAGAAAAAGAGATAGAGATCAGCCGGCTAGAGAGCTGCGGAACTTGCAATGGTACAGGGGCAAAACCGGGAACCAAGCCGACCAGATGTAGCACTTGTGGCGGTCAAGGTAGGGTTGTCTCATCAACAAGGACACCATTAGGTATTTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGACTGGAGAAATTTCAACACCATGCAATACATGTTCTGGGGATGGTCGAGTACGGAGGACAAAACGGATAAGTCTGAAAGTCCCGGCTGGCGTAGACTCTGCTAGCCGTTTGAGGGTCCGAAATGAAGGAAATGCTGGAAGGCGAGGCGGTGCTCCTGGTGACCTCTTTGTTGTTATTGAAGTTATGCCCGATCCGGTCCTTAAACGCGATGACACCAACATTTTATACACCTGTAAGGTGTCATATATAGATGCAATCTTGGGAACTACAGTCAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAATCCCTGCTGGGACCCAACCGAACACAACACTTGTTATGGCTAGAAAAGGTGTTCCCCTGCTGAACAAGAGCAGTATGAGGGGTGATCAGTTGGTTCGGGTGCAAGTTGAAATCCCCAAAAAGTTGAGCAGCGATGAGAGGAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCGACTGGTAAGAGATGA 1314 0.4566 MAITSFGSISVAQWGIRPQLFMRSCMTGRITSSGFSVTSRVSFMAAPSSSFFGSDSLHALYDLGSSQTFHSRKGSRLIVRADADYYAVLGVSRNASKSEIKSAYRKLARNYHPDVNKEPGAEQKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGMGMGDFSNPFDLFETLFEGMNRGSRGSWNGALDGEDEYYSLVLNFKEAVFGVEKEIEISRLESCGTCNGTGAKPGTKPTRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRVRRTKRISLKVPAGVDSASRLRVRNEGNAGRRGGAPGDLFVVIEVMPDPVLKRDDTNILYTCKVSYIDAILGTTVKVPTVDGMVDLKIPAGTQPNTTLVMARKGVPLLNKSSMRGDQLVRVQVEIPKKLSSDERKLIEELADLSKGKTATGKR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1269 437 Gene3D - 190 325 - -
Lele20g1269 437 FunFam Chaperone protein dnaJ 1, mitochondrial 330 437 - -
Lele20g1269 437 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Lele20g1269 437 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Lele20g1269 437 CDD DnaJ 84 137 IPR001623 -
Lele20g1269 437 Pfam DnaJ domain 84 145 IPR001623 -
Lele20g1269 437 FunFam Putative Mitochondrial DnaJ chaperone 275 325 - -
Lele20g1269 437 SMART dnaj_3 83 140 IPR001623 -
Lele20g1269 437 Pfam DnaJ C terminal domain 195 410 IPR002939 -
Lele20g1269 437 CDD DnaJ_C 191 413 - -
Lele20g1269 437 Gene3D DnaJ domain 81 185 IPR036869 -
Lele20g1269 437 SUPERFAMILY HSP40/DnaJ peptide-binding domain 188 342 IPR008971 GO:0006457|GO:0051082
Lele20g1269 437 Hamap Chaperone protein DnaJ [dnaJ]. 81 433 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele20g1269 437 PRINTS DnaJ domain signature 86 104 IPR001623 -
Lele20g1269 437 PRINTS DnaJ domain signature 104 119 IPR001623 -
Lele20g1269 437 PRINTS DnaJ domain signature 140 159 IPR001623 -
Lele20g1269 437 PRINTS DnaJ domain signature 120 140 IPR001623 -
Lele20g1269 437 CDD DnaJ_zf 220 283 IPR001305 GO:0031072|GO:0051082
Lele20g1269 437 ProSiteProfiles Zinc finger CR-type profile. 207 288 IPR001305 GO:0031072|GO:0051082
Lele20g1269 437 SUPERFAMILY HSP40/DnaJ peptide-binding domain 335 421 IPR008971 GO:0006457|GO:0051082
Lele20g1269 437 Gene3D - 330 436 - -
Lele20g1269 437 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 207 286 IPR036410 -
Lele20g1269 437 Gene3D - 220 283 - -
Lele20g1269 437 TIGRFAM DnaJ_bact: chaperone protein DnaJ 84 426 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele20g1269 437 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 46 434 - -
Lele20g1269 437 FunFam Chaperone protein dnaJ A6 chloroplastic 81 184 - -
Lele20g1269 437 FunFam Molecular chaperone DnaJ 212 288 - -
Lele20g1269 437 Pfam DnaJ central domain 220 283 IPR001305 GO:0031072|GO:0051082
Lele20g1269 437 SUPERFAMILY Chaperone J-domain 81 176 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1269 Lele-ChrLele20 17450370 17453591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1269 85 147 C2H2 Transcription Factor Family AT1G74250 43.478 3.10e-09 57.0