Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1267 ATGGTCTTCCTAATCGTGCTTTTACTATTGGCTTGCTTATGCTCTTTTGTATCTTCCGATTTTCAAGGGGATGCACTATTTGCACTGAAGTTATCATTGAATGCTTCAGCTAATCAGCTTACTGACTGGAATCAAAATCAAGTAAACCCTTGTACTTGGTCCCGTGTTTACTGTGACCAGAATTCCAATGTTGTTCAAGTTTCATTAGCATTGATGGGATTTACTGGTGTCTTGACCCCAAGAATTGGAGCTCTAAAAAGTCTTGCAACTCTTTCATTGCAAGGGAATGGCATCACTGGTGAAATACCAAAAGAATTGGGAAATCTGACTAGCTTAATCAGACTTGATCTGGAAAACAACAGATTAATGGGAGAAATACCATCTACCCTTGGTAATCTTAGAAAGCTTCAGTTCTTGACTTTGAGTCAGAACAATCTCAGTGGGAATATTCCTGAATCACTTGGCAGTCTTCCTAGCTTGATCAATGTTCTGCTGGACTCAAATAATCTCGGTGGTCGAATTCCTGAGCAGTTATTCAAGGTTCCTAAATACAATTTCAGCGGAAATAAGTTAATTTGTGACATGAATTACCGCCACCCTTGTGCCTCTGATAATGCAGATCAAGGCTCATCCCATAAGCCAAAAATTGGCATTATAGTTGGAATTATTGTTGGGTTAATTGTTGTAATTTTTCTCGCTGGTCTGCTGTTCTTCTGGTGTAAGAGTAGACGCAAGGGCCACAGACGAGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGCCGAATTGCATTTGGTCAACTAAAAAGATTTGCTTGGAGAGAATTACAGATAGCCACTGACAACTTCAGTGAGAAGAATGTTCTGGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGAGTTCTCGCTGATAACACTAAAGTGGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCTGCTTTCCAGCGGGAAGTTGAGATGATAAGTGTAGCTGTCCATAGGAACCTGTTACGGCTGATTGGATTTTGTACTACTCCGACTGAACGTCTTCTAATCTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGACTAAGAGAACTGAAACCTGGAGAACCTGTTTTAGACTGGCCAACAAGAAAGCGAGTAGCTTTAGGCACAGCCCGTGGCCTAGAATATCTTCATGAGCATTGCAATCCTAAAATTATTCATCGGGATGTGAAGGCTGCAAATGTATTGCTAGATGAAGATTTTGAGGCTGTTGTTGGTGACTTTGGTTTGGCAAAGTTAGTTGATGTTCGAAAAACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAATACTTGTCTACTGGGAAATCTTCTGAAAGGACAGATGTTTTTGGTTATGGCATTATGCTTTTGGAGCTTGTTACTGGTCAACGGGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGACGTGTTATTACTTGACCATGTTAAGAAACTAGAAAGGGAAAAACGTCTAGATGCTATTGTCGACTGCAACCTAAATAAAAATTACAACATACAAGAAGTTGAAATGATGATACAAGTTGCATTACTCTGCACCCAAGCTTCACCGGAGGACCGTCCAGCAATGTCAGAGGTTGTTAGGATGCTAGAAGGAGAAGGGCTGGCTGAAAGGTGGGAGGAATGGCAACATGTGGAGGTTACTCGGAGGCAAGAATATGAGAGACTGCAAAGAAGATTTGACTGGGGAGAAGATTCAGTTTATAACCAAGATGCCATTGAGTTGTCTGGTGGGAGATGA 1821 0.4146 MVFLIVLLLLACLCSFVSSDFQGDALFALKLSLNASANQLTDWNQNQVNPCTWSRVYCDQNSNVVQVSLALMGFTGVLTPRIGALKSLATLSLQGNGITGEIPKELGNLTSLIRLDLENNRLMGEIPSTLGNLRKLQFLTLSQNNLSGNIPESLGSLPSLINVLLDSNNLGGRIPEQLFKVPKYNFSGNKLICDMNYRHPCASDNADQGSSHKPKIGIIVGIIVGLIVVIFLAGLLFFWCKSRRKGHRREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLIYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDCNLNKNYNIQEVEMMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1267 606 Gene3D Phosphorylase Kinase; domain 1 252 359 - -
Lele20g1267 606 FunFam Somatic embryogenesis receptor kinase 1 252 359 - -
Lele20g1267 606 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 568 - -
Lele20g1267 606 FunFam Somatic embryogenesis receptor-like kinase 1 360 577 - -
Lele20g1267 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Lele20g1267 606 Gene3D Ribonuclease Inhibitor 20 202 IPR032675 -
Lele20g1267 606 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
Lele20g1267 606 SMART serkin_6 283 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1267 606 SUPERFAMILY L domain-like 23 192 - -
Lele20g1267 606 FunFam Putative LRR receptor-like serine/threonine-protein kinase 19 203 - -
Lele20g1267 606 SUPERFAMILY Protein kinase-like (PK-like) 263 558 IPR011009 -
Lele20g1267 606 ProSiteProfiles Protein kinase domain profile. 283 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1267 606 Gene3D Transferase(Phosphotransferase) domain 1 360 577 - -
Lele20g1267 606 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
Lele20g1267 606 Pfam Protein kinase domain 284 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1267 Lele-ChrLele20 17439254 17443519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1267 1 606 Receptor kinase-like Gene Family AT5G10290 78.713 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele20g1267 Pkinase 8.5e-43 CL0016