Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1265 ATGGTTGGTAGCTCATGTTCTTGTTTGAAGAAAGAGAGGGAACAAGGGACAAAAGCAGAAAGGAGTGGAAGAAGAAAGGTAAGAAATAGTAAAACAAAAATGGGAAGATCACCATGCTGTGATGAGATTGGTTTGAAGAAAGGCCCTTGGACTCCTGAAGAAGATCAGAAGCTTGTTAACTTCATTGAAGAGCATGGTCATAGGAGCTGGAGAGCTCTTCCAAAACTAGCAGGGCTGAACAGATGTGGGAAAAGTTGCAGGCTACGATGGACGAATTACTTGAGGCCTGACATAAAGAGAGGAAAATTTTCACAAGAAGAACAAGAAACAATTCTGAATCTCCATGCTATCCTGGGAAACAAATGGTCGGCGATTGCGAGCCAGATACCGGGACGGACAGATAACGAGATCAAGAATTTCTGGAACACTCATCTAAAGAAGAAGCTTATCCAAATGGGTTATGATCCGATGACACACCAACCTCGAACTGATATTTTCTCAAGTTTGCCTCATCTCGTAGCACTGGCTAATCTCACAGGACTTTTGGACCATCAATCATGGCAACAGAGTGTTGCTCTGAGACTGCAAAAAGATGCTGTTCAATTGGCCAGACTTCAAGGCTTACAAAATCTCTTGCACCCTCCACCTCAACCTTCTGCAACTGAACCCAATTTAAACCCTGACGTCACAAACTTGGATACCATTAATATTGATCTTCTGAAGTTCCTGAATCCGACGAACAACAACGCTGCTTTAAGTTCAACCCAGTTGGAAAACAATAATGATATAAATAATCCACCTCCAGTTGGAGTCAACAATCTCCAATTGGGCTATGACTCGTTCTCTAGCATGCCAGGGTTGAAATCGCCACGTAACTATCATCAACCACCATCGTCGTTAAGTCAGGGAGAAAGTTCTCCCAATTCACCATGGCTTCTTTCATGCTCAAGCAGCACTATTCCATCTCCTTCCACTGTGCCAGAGATTTCAATGGCAAATACTGTTAATTATGGAGAACTGGGGGGTCCTTCCACGTGGCCCGACCTTCTGCTGGAGGACTACCCTTTGTTCCATGAGATTTCCTAG 1086 0.4383 MVGSSCSCLKKEREQGTKAERSGRRKVRNSKTKMGRSPCCDEIGLKKGPWTPEEDQKLVNFIEEHGHRSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEQETILNLHAILGNKWSAIASQIPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDIFSSLPHLVALANLTGLLDHQSWQQSVALRLQKDAVQLARLQGLQNLLHPPPQPSATEPNLNPDVTNLDTINIDLLKFLNPTNNNAALSSTQLENNNDINNPPPVGVNNLQLGYDSFSSMPGLKSPRNYHQPPSSLSQGESSPNSPWLLSCSSSTIPSPSTVPEISMANTVNYGELGGPSTWPDLLLEDYPLFHEIS 361
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1265 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 34 247 - -
Lele20g1265 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Lele20g1265 361 MobiDBLite consensus disorder prediction 257 276 - -
Lele20g1265 361 MobiDBLite consensus disorder prediction 285 325 - -
Lele20g1265 361 Gene3D - 46 99 - -
Lele20g1265 361 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Lele20g1265 361 FunFam MYB transcription factor 101 162 - -
Lele20g1265 361 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Lele20g1265 361 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Lele20g1265 361 CDD SANT 102 145 IPR001005 -
Lele20g1265 361 CDD SANT 49 94 IPR001005 -
Lele20g1265 361 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Lele20g1265 361 SMART sant 46 96 IPR001005 -
Lele20g1265 361 SMART sant 99 147 IPR001005 -
Lele20g1265 361 FunFam MYB-related transcription factor 46 99 - -
Lele20g1265 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Lele20g1265 361 SUPERFAMILY Homeodomain-like 44 141 IPR009057 -
Lele20g1265 361 MobiDBLite consensus disorder prediction 1 36 - -
Lele20g1265 361 Gene3D - 101 164 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele20g1265 Lele-ChrLele20 17428888 17431089 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1265 34 360 MYB Transcription Factor Family AT5G10280 49.030 4.12e-101 300
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele20g1265 Myb_DNA-binding 2.3e-16 CL0123