Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1240 ATGAAAGCTCTCTCTGATTTCTTCTTTCATCTCTACGCAAAGACCATCGTCTTGTTGGTCTTCCTGCTGATAGAACTCATCACCCTCATTCGAAACCTAAAAACACACGCACCTCCGATTACCATCTCCCAGTACCTCCAACTCATTGAAGAGAATAACCCCACTGTTTGTTTCACCAGAACTCTGGACGTGGCCGACCAACTAGAGTGCAGGGTTTGCTTATCTGAGCTTCAAGAAGGCGACAAAGTTAGGAACTTGAAATGTAAACACACATTTCACAAGGAATGCTTGGACCGCTGGTTGCTTCAGTTTTGGGCCACTTGTCCTCTCTGTAGGAACAGAGTCCTACCAGGAGATGTCGTGACCGATTACCGACGGCTCCGGAATCAGGTGAATTATGATGACGACGATAATGATAATGATAATGAACACCACCCAATTATGTCTTACTTGTTTGCATTACGTGAGGGAATTCATCACCTTTCCCTTCTGGGATTCCTTGGAAGATTAGTGATGTACCATCTGCTGGAATGGGCTGGATCTCTGGAAATTCTGGAAATATTGAAGTCTCTATCTGTCCAGTTCACGTTGAAAATATCTCAGCATAAGCAGATATTTGTAGACATATTACTCTACAGATTTTCATGGAGTTTAATTCTCACAGGAGTGAACTGGACCCCACAACTTCACACGAAGCCAGATTCACATGAAGGGAACAAGCTAGGTCAGCTGAACACAATAAAAGTGTTGATTAAGGAGCTGATAATAGTGAGAGAGCTTCTGAGGACGATAGGTCAACTGGATTTGCCGAACAACGCAACAAGTGGTCCTGAATGTTAA 840 0.4357 MKALSDFFFHLYAKTIVLLVFLLIELITLIRNLKTHAPPITISQYLQLIEENNPTVCFTRTLDVADQLECRVCLSELQEGDKVRNLKCKHTFHKECLDRWLLQFWATCPLCRNRVLPGDVVTDYRRLRNQVNYDDDDNDNDNEHHPIMSYLFALREGIHHLSLLGFLGRLVMYHLLEWAGSLEILEILKSLSVQFTLKISQHKQIFVDILLYRFSWSLILTGVNWTPQLHTKPDSHEGNKLGQLNTIKVLIKELIIVRELLRTIGQLDLPNNATSGPEC 279
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1240 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 118 IPR013083 -
Lele20g1240 279 SMART ring_2 70 111 IPR001841 -
Lele20g1240 279 CDD mRING-H2-C3H2C2D_ZSWM2 69 112 - -
Lele20g1240 279 PANTHER - 1 156 - -
Lele20g1240 279 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Lele20g1240 279 SUPERFAMILY RING/U-box 55 118 - -
Lele20g1240 279 Pfam Ring finger domain 69 112 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele20g1240 Lele-ChrLele20 17295998 17297200 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1240 69 126 C3H Transcription Factor Family AT1G15100 53.448 3.87e-17 75.1