LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele20g1214	ATGTCAACAACCACACGATCGATTCTGAACCATGATAATAATTTGTTCGAGGATCAGCAGTATCTGATGCATACACAGCTGGGGTTCCTTCCTAATTTACCAGGAAATCTGAGCTTTCCTTCTTTGGGTTGCCATCAATCTTTGAAGGGCATCCATTCTATGGGTCCTTGGCTTTCATCCGAGACAGCTTCTACCGCCACTGCAAATCTTACAGAAACCCTATTTGCAGCCCCAACTCAAAAGCCACGGCAAGACCTCGCATCTAGCTTGGGAGGACCAACCCAACTCCTTTCCTTGAACACATCAAGTGTACTGAATCCATGGGGATGGGGAGAAGTAAGCGAATGCCTGAGCAGTAAAAGAAGCACTGGAGGAGAGAATAGTCATTGTCTAGGGATGTCTTCAATGAAGATGAAGAAGATAAAGGGAAGGAGGAAGGTGAGGGAGCCTAGGTTTTGCTTCAAGACCATGAGCGATGTCGATGTCTTGGATGATGGCTACAAATGGAGGAAGTATGGACAGAAGGTCGTCAAGAACACCCAGCACCCCAGAAGTTATTATCGTTGCACACAAGACAATTGCCGCGTGAAGAAGAGGGTGGAACGCTTGGCGGAGGATCCGAGGATGGTGATAACAACGTACGAAGGGAGACACACACACTCTCCCTCCAATGATGTTGAAGACTCGCAAGCTTCTTCTCAGCTGACTAATTTCGTGTGGTAG	723	0.4744	MSTTTRSILNHDNNLFEDQQYLMHTQLGFLPNLPGNLSFPSLGCHQSLKGIHSMGPWLSSETASTATANLTETLFAAPTQKPRQDLASSLGGPTQLLSLNTSSVLNPWGWGEVSECLSSKRSTGGENSHCLGMSSMKMKKIKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHTHSPSNDVEDSQASSQLTNFVW	240

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele20g1214	240	MobiDBLite	consensus disorder prediction	225	240	-	-
	Lele20g1214	240	FunFam	WRKY transcription factor 57	149	223	-	-
	Lele20g1214	240	SMART	WRKY_cls	163	222	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele20g1214	240	Pfam	WRKY DNA -binding domain	164	220	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele20g1214	240	SUPERFAMILY	WRKY DNA-binding domain	155	222	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele20g1214	240	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	121	224	IPR044810	GO:0003700
	Lele20g1214	240	ProSiteProfiles	WRKY domain profile.	158	223	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele20g1214	240	MobiDBLite	consensus disorder prediction	216	240	-	-
	Lele20g1214	240	Gene3D	WRKY domain	139	223	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele20g1214	Lele-ChrLele20	17165833	17167408	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele20g1214	126	240	WRKY Transcription Factor Family	AT4G39410	75.207	1.84e-61	193

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele20g1214		WRKY	1.9e-25	CL0274