Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1209 ATGTCAAAGGTGGCGAATCTGAGAGACGAGGCAAAGGAAGAAGGTGAACACACAAGCAATCCCTTGACGTCTATGCCGATGGTATTTCCAGATATTGATAGGGAGAAGGAGATGTCTGCTATGGTTTCAGCTTTGACCCGAGTTGTGTCCGGAGAGGTGCACTCTGATTATACGGATTTTCATCACAACTCAACGTACCTGAATACAGTTGAAGCTTCTGCGGCCCCGTCTTCTCCATTCTATGGTACTAGTTCTGCTGTAACATTGTGCATGGAAGATGGCACATTCTCACAGAGAGGTTCATCTTCATCCCCTGCTGTTCCAACAAGTAGAGAAGGGAGGAGCGAAAGAAACGAAATGGGGGAAATGAGGAATGCAGTGTATGAATACAGAGCAGAGAACAGGAGGGAGCAGGGGAGAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGGAAGTGGGCTGCGGAGATCAGAGACCCGTTCAAAGCAGTGAGGGTGTGGTTAGGCACATTTGAGACAGCAGAAGCCGCCGCCAGAGCATATGACGAAGCTGCCCTGGGTTTCAGAGGCAACAAGGCTAAGCTCAACTTCCCTGAAAATGTCACCCTACGTCCCCCAACCCCAAATCTTCACAGCTACGCTCAGATAGATCACATGGTTCCCCATCTTCAACCATCCCTAACGCCGCCGGCTGCGTCGTCCTCCTCCTCGTTTTCTGCCTTTGCCTCCTCTGTTACTACACTTCCTTCGCTCTATCCTGCACAGACTCAAATGAGTGATTCTGAGTATTTAGTGCATTCATCGTTTTCTTTAGCCGGTTACACCTCCTTTTACTCTGGATGA 846 0.4941 MSKVANLRDEAKEEGEHTSNPLTSMPMVFPDIDREKEMSAMVSALTRVVSGEVHSDYTDFHHNSTYLNTVEASAAPSSPFYGTSSAVTLCMEDGTFSQRGSSSSPAVPTSREGRSERNEMGEMRNAVYEYRAENRREQGRRKYRGVRQRPWGKWAAEIRDPFKAVRVWLGTFETAEAAARAYDEAALGFRGNKAKLNFPENVTLRPPTPNLHSYAQIDHMVPHLQPSLTPPAASSSSSFSAFASSVTTLPSLYPAQTQMSDSEYLVHSSFSLAGYTSFYSG 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1209 281 ProSiteProfiles AP2/ERF domain profile. 142 199 IPR001471 GO:0003700|GO:0006355
Lele20g1209 281 FunFam Ethylene-responsive transcription factor 2 141 200 - -
Lele20g1209 281 MobiDBLite consensus disorder prediction 95 111 - -
Lele20g1209 281 Gene3D AP2/ERF domain 141 201 IPR036955 GO:0003700|GO:0006355
Lele20g1209 281 PANTHER DNA-BINDING DOMAIN 105 236 IPR044808 GO:0003700|GO:0009873
Lele20g1209 281 SUPERFAMILY DNA-binding domain 142 200 IPR016177 GO:0003677
Lele20g1209 281 MobiDBLite consensus disorder prediction 95 118 - -
Lele20g1209 281 Pfam AP2 domain 142 191 IPR001471 GO:0003700|GO:0006355
Lele20g1209 281 CDD AP2 142 201 IPR001471 GO:0003700|GO:0006355
Lele20g1209 281 MobiDBLite consensus disorder prediction 1 17 - -
Lele20g1209 281 PRINTS Ethylene responsive element binding protein signature 165 181 IPR001471 GO:0003700|GO:0006355
Lele20g1209 281 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Lele20g1209 281 SMART rav1_2 142 205 IPR001471 GO:0003700|GO:0006355
Lele20g1209 281 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1209 Lele-ChrLele20 17138894 17140023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1209 132 227 AP2-EREBP Transcription Factor Family AT5G61890 64.646 7.79e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele20g1209 AP2 4.6e-13 CL0081