Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1206 ATGGGCTTTGACGAATACGATTACTTGGAGAAGACAGTGGAGGAGCAGGAAGATCGAGATTCTAAGAAGAAGAAGGAGAGCAGCGAGAAAGGTGAAAGGAGTTACAGGAAGCGCGAGTTGGACGAGAATCTGGATGGTGAAGAAAAGAAGAGCAAGAAGACCAGAGGAGACGAGGAGAATGGGTCAAAGAAGGATCGTGATGACCGCGAGAGAGAACGGTCTAGCCGCGAAAAGGAGCGCCATAGGAGTGGCAAGGAGAGGGACGGGGAGAGAGAGCGAGAGAGGACTAATAGAGAGAAGGATAGGGAGAAGGAGAGAGACAAAGAGAGGGATAAGGATAGGGAGAGGGATAGAGAAAGAAGGGATAAAGAGAGGGAGAGAAGAGAGAGGGACAAAGAGAAGGAAAGAGAACGGGAGAGAAGGGAAAGGGAGGAGAGAGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATAGAGATAGAGAGAGAGAACGAGAACTGGAAATTAGAGATAGCCGGAGATTCAGAGACAAGAAAGAGGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCCTTAAAGGCCACTGAGAGAGATGTTTATGAATTTTTCTCGAAAGCTGGGAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAATTCAAGACGGTCTAAAGGAGTTGGGTATGTTGAATTTTATGATGCAATGTCGGTGCCAATGGCAATTGCTCTCTCTGGTCAATTGCTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACTGGAGCTGCAGGTGTAGCAGGACCATATGGAGCAGTAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAGAGTCAGCTGAGGGAAATTTTTGAGCCGTTTGGTCCAGTGGAGCTCGTGCAGCTGCCTACTGACCTGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTTCCCAACTTGAACATGCTAAAGCAGCTCAGAGTTTAAATGGAAAACTGGAGATTGCTGGTAGGACTATCAAGGTTTCATGTGTGACAGAACATATGGGGAGCCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGAGGATTGGCCTTAAATGCTCAGTCTAGAGCATTGCTTATGCAGAAGCTGGATCGATCTGGCATTGCCACAAGCTTTACAGGGTCCGTTGGTGTGCCCATTGTAAATGGGTCTGTTCCTGCTCAACAGTCTGTTAGTTTGCCTAGTGCTCCAGGTTTAATGCCCACACCAGCTCCCCAAGCACAAATCATGCCTTCCCCTGTGTTAGAACCTGTAGGAAGCCCTAGCGAGTGTCTACTGTTGAAGAATATGTTTGATCCGACCACTGAGACAGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAGATTTGGCCGGGTGAAGCATATTTATGTAGACAAAAGAAGTGCAGGATTTGTGTATTTGCGGTTTGAATCAGTGGAAGCAGCAAGTGCTGCTCAACGATCTATGCACTTGAGATGGTTTGCACGCAGGACGATTTCAGCTATTTTCATGGAACCGCAGCTATATGAAGCCAAGTTTAAAGCGGAAGCTTGA 1686 0.4656 MGFDEYDYLEKTVEEQEDRDSKKKKESSEKGERSYRKRELDENLDGEEKKSKKTRGDEENGSKKDRDDRERERSSREKERHRSGKERDGERERERTNREKDREKERDKERDKDRERDRERRDKERERRERDKEKERERERREREERERSRRSRSRSDRDRERERELEIRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPTDLETGHCKGFGFIQFSQLEHAKAAQSLNGKLEIAGRTIKVSCVTEHMGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIATSFTGSVGVPIVNGSVPAQQSVSLPSAPGLMPTPAPQAQIMPSPVLEPVGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSRFGRVKHIYVDKRSAGFVYLRFESVEAASAAQRSMHLRWFARRTISAIFMEPQLYEAKFKAEA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1206 561 Gene3D - 463 561 IPR012677 -
Lele20g1206 561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Lele20g1206 561 TIGRFAM SF-CC1: splicing factor, CC1-like family 84 558 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lele20g1206 561 Coils Coil 86 106 - -
Lele20g1206 561 Gene3D - 290 386 IPR012677 -
Lele20g1206 561 Coils Coil 114 149 - -
Lele20g1206 561 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 558 - -
Lele20g1206 561 Gene3D - 121 280 IPR012677 -
Lele20g1206 561 CDD RRM3_RBM39_like 466 548 - -
Lele20g1206 561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 372 IPR000504 GO:0003723
Lele20g1206 561 SUPERFAMILY RNA-binding domain, RBD 294 549 IPR035979 GO:0003676
Lele20g1206 561 CDD RRM1_RBM39_like 193 265 - -
Lele20g1206 561 FunFam Splicing factor CC1-like 278 383 - -
Lele20g1206 561 FunFam Splicing factor CC1-like 126 277 - -
Lele20g1206 561 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 387 485 IPR029123 -
Lele20g1206 561 MobiDBLite consensus disorder prediction 1 162 - -
Lele20g1206 561 CDD RRM2_RBM23_RBM39 296 368 - -
Lele20g1206 561 SUPERFAMILY RNA-binding domain, RBD 185 272 IPR035979 GO:0003676
Lele20g1206 561 SMART rrm1_1 193 265 IPR000504 GO:0003723
Lele20g1206 561 SMART rrm1_1 295 368 IPR000504 GO:0003723
Lele20g1206 561 SMART rrm1_1 468 546 IPR000504 GO:0003723
Lele20g1206 561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 490 543 IPR000504 GO:0003723
Lele20g1206 561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 366 IPR000504 GO:0003723
Lele20g1206 561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 261 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1206 Lele-ChrLele20 17124101 17130054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1206 274 367 Eukaryotic Initiation Factors Gene Family AT4G34110 35.789 5.34e-08 53.9