Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1194 ATGTTTGCCTCTTCTTCTTCCTCTGGCTCGCTGTTTCTCCAGGATCTTCTTGGGGATTTCCATTCCAGAAGGTTGCTCCTTCTACACAACCCACTTAACTCACAGGCCACCCCTCCGGCGGCTTCCTTAACCACCCACAATTCGACAGACAAGTACCTTGGGAATGGCAATTTTGACGCGAACGTTGTCATGGTGCTCTCGGTGTTATTGTGTGCTCTTATATGTTCTCTCGGCTTGAACTCCATCATAAGGTGTGCCCTGAGGTGTTCCAATCTGGTGGTCAACATCGAGCCCGCCGGGACAAGCGCTCAGGCTCGATTGGCCAACACCGGAGTCAAGAAGAAAGCTCTCAAGACTTTCCCCACCGTAAACTACTCCGCAGAGCTCAAGCTTCCAGGTTTGGACACAGAGTGCGTTATATGCTTGTCAGATTTTACCAATGGCGAACGTGTAAGGATTTTGCCAAAGTGCAACCATGGCTTCCATGTGAAATGCATTGACAAGTGGCTCAGCTCGCACTCGTCTTGTCCTAAGTGCAGACAGTGCCTAATTCAAACTTGCCAGAAGATTGTTGGATGCGCTACGACTCAGGCTAGCTCGTCCCAACCACCTGAAACCATTATCAGGATTGCTCCTCTCGAACCAGAAGGTCTGGTCCGTGACTACAGGGGATCGGAAGCACTTAATTAGCTGCGAATGGGAGGTTATGAATATGTTATTTTTTCAACAATGGCCCGAACCAAGCAAACTGCCCGCAAGTCTACTGGTGGTAAGGCCCCTCGCAAGCAGCTAGCGACCAAAGCTGCTCGGAAATCGGCTCCCGCCACCGGTGGAGTCAAGAAACCTCACCGATTCAGGCCCGGAACCGTAGCTTTGAGGGAGATTAGGAAGTACCAGAAGAGCACCGAGCTCCTGATCCGTAAGCTCCCATTCCAGCGTTTGGTTCGAGAAATTGCTCAGGACTTCAAGACTGATCTCAGGTTCCAGAGCAGTGCCGTGGCTGCGCTACAGGAGGCTGCTGAGGCCTACCTCGTCGGGTTGTTTGAAGACACCAATTTGTGCGCAATCCACGCCAAGAGGGTGACCATTATGCCTAAGGACATTCAACTTGCTCGCAGAATTAGAGGCGAGCGGGCTTAG 1140 0.5167 MFASSSSSGSLFLQDLLGDFHSRRLLLLHNPLNSQATPPAASLTTHNSTDKYLGNGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVNIEPAGTSAQARLANTGVKKKALKTFPTVNYSAELKLPGLDTECVICLSDFTNGERVRILPKCNHGFHVKCIDKWLSSHSSCPKCRQCLIQTCQKIVGCATTQASSSQPPETIIRIAPLEPEGLVRDYRGSEALNXLRMGGYEYVIFSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1194 379 Gene3D Histone, subunit A 245 379 IPR009072 GO:0046982
Lele20g1194 379 SUPERFAMILY RING/U-box 117 185 - -
Lele20g1194 379 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Lele20g1194 379 PANTHER RING-H2 FINGER PROTEIN ATL78 15 218 IPR044602 GO:0016567|GO:0016740
Lele20g1194 379 FunFam Histone H3 245 293 - -
Lele20g1194 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 184 IPR013083 -
Lele20g1194 379 SMART ring_2 138 179 IPR001841 -
Lele20g1194 379 Pfam Core histone H2A/H2B/H3/H4 244 375 IPR007125 GO:0003677
Lele20g1194 379 FunFam Histone H3.3 296 379 - -
Lele20g1194 379 Pfam Ring finger domain 137 180 IPR001841 -
Lele20g1194 379 CDD RING-H2_PA-TM-RING 137 180 - -
Lele20g1194 379 SUPERFAMILY Histone-fold 245 376 IPR009072 GO:0046982
Lele20g1194 379 PRINTS Histone H3 signature 301 318 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele20g1194 379 PRINTS Histone H3 signature 357 378 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele20g1194 379 PRINTS Histone H3 signature 246 260 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele20g1194 379 PRINTS Histone H3 signature 341 357 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele20g1194 379 PRINTS Histone H3 signature 260 274 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele20g1194 379 PRINTS Histone H3 signature 277 298 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele20g1194 379 PRINTS Histone H3 signature 323 341 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele20g1194 379 ProSitePatterns Histone H3 signature 1. 258 264 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele20g1194 379 ProSitePatterns Histone H3 signature 2. 310 318 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele20g1194 379 SMART h35 277 379 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele20g1194 379 FunFam RING-H2 finger protein ATL73 99 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1194 Lele-ChrLele20 17041282 17045536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1194 32 184 C3H Transcription Factor Family AT3G10910 48.148 8.24e-40 138