Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1190 ATGGGGAGAGATGATCTGTGCGTCACAATTCCTAGCTTCTTCAGGTGCCCAATTTCCCTGGACGTCATGAAATCCCCCGTCAGCCTCTGCACCGGAGTAACATACGATCGGTCCTGTATCCAACGCTGGCTCGACGACGGCAACAACACCTGCCCCGCCACCATGCAGGTACTTCAATCCAAGGAATTCGTCCCTAACCTTACGCTCCAGAGGCTTATCCAAATCTGGACTGACTCCGTTCGACACCGAATGGAATCTGCCGATTCCCCGGCTGCCAAATCGGTCCCGTCCCAGGACCAAGTCGTCGCCGCTACCCGAGATTTGGAGGCTAAGAGCGAGAACCCTTTGCGCTCCCTCTCCGGAATTCTATCCTTCGCCGGAGCATCCGAAGAGAACCGGGAATTCCTAGCCAACATAGATGGATTAGTACCTTTGCTCGTTGGTTTCCTCGACAATGTCGATGGTGGAATTACTCGGAGCGTCGAATTTCTTGAGGAGGTTGTCCAGGCTTTGGAGTTGGTCCTGAATAAAGCAAAAGATGGCGAGACATTGAAGCATACGATCGTGAAGAGCAAGGAAGGCAATTGTTTAGCTTCTCTACTTCTTGTTCTGCAACGAGGCAACTCTGATTCGAAAATTGCGTCGGCTAAGATTTTGAAATTCGCCGCTGCGGACGTTGAATCGAAAATCTTGATCGCTGAAAAGGAAGGCCTAATTCATGAATTGCTTAAAATGACGACATCAGACAAAGATGCGACGCTAATCGAGAACGGCTTATCCTGCTTGGTGGCAATCTCAACGCCGAAACGAAATAAGGCGAAATTTATCCATCTCGAAGCTGTGAAGAAATTATCGGAATTGCTTTCGGAGTCAAAGTGGAGCATTTCCATCACCGAGAATGTGCTGACGCTGCTAGAAATGGTGTCGACGACCAAGGAAGGAAGGTTGCAGATTTGCGAGGACCCAAATTGCGTGGCGTCAATATTGCAGAAGGTCCTGAAGGTATCAAATGTCGCAACGGAGCACGCAGTGACTATACTTTGGAGCGTGTGTTATCTATTCCGTGATCAGAAGGCGCAGGAAGCGGTGACGAAGGCGAACGGTTTGACCAAGGTTCTGCTGCTGATGCAGAGCAACTGTTCGACGGGAGTTCGTCAAATGTGCGCCGATTTGCTCAAGATTTTCCGGGTTAACTCCAAATCATGCCTCTCCTGCTACCATACCAAGACCACCCACATCATGCCCTTTTGA 1251 0.4996 MGRDDLCVTIPSFFRCPISLDVMKSPVSLCTGVTYDRSCIQRWLDDGNNTCPATMQVLQSKEFVPNLTLQRLIQIWTDSVRHRMESADSPAAKSVPSQDQVVAATRDLEAKSENPLRSLSGILSFAGASEENREFLANIDGLVPLLVGFLDNVDGGITRSVEFLEEVVQALELVLNKAKDGETLKHTIVKSKEGNCLASLLLVLQRGNSDSKIASAKILKFAAADVESKILIAEKEGLIHELLKMTTSDKDATLIENGLSCLVAISTPKRNKAKFIHLEAVKKLSELLSESKWSISITENVLTLLEMVSTTKEGRLQICEDPNCVASILQKVLKVSNVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKVLLLMQSNCSTGVRQMCADLLKIFRVNSKSCLSCYHTKTTHIMPF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1190 416 Coils Coil 161 181 - -
Lele20g1190 416 PANTHER WDSAM1 PROTEIN 9 404 IPR045185 GO:0061630
Lele20g1190 416 SUPERFAMILY RING/U-box 5 79 - -
Lele20g1190 416 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lele20g1190 416 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lele20g1190 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 79 IPR013083 -
Lele20g1190 416 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Lele20g1190 416 SUPERFAMILY ARM repeat 167 402 IPR016024 -
Lele20g1190 416 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lele20g1190 416 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lele20g1190 416 Gene3D - 80 407 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1190 Lele-ChrLele20 17006268 17007518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1190 1 416 U-box Gene Family AT5G64660 51.529 9.98e-143 411